Factsheet for HORVU6Hr1G078160.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G318300.1	Wheat	nucleus	90.84	96.47
TraesCS6B01G348300.1	Wheat	nucleus	91.07	96.36
TraesCS6D01G297500.1	Wheat	plastid	93.13	92.7
Os02t0755200-01	Rice	nucleus	81.79	84.1
OQU85392	Sorghum	nucleus	80.3	82.47
Zm00001d018102_P001	Maize	nucleus	79.84	82.1
GSMUA_Achr3P06520_001	Banana	extracellular, nucleus, peroxisome	24.28	68.83
HORVU1Hr1G057320.1	Barley	extracellular, peroxisome	8.13	64.55
GSMUA_Achr9P14930_001	Banana	nucleus	49.71	62.0
VIT_03s0017g01000.t01	Wine grape	nucleus	47.77	61.6
KRH48463	Soybean	cytosol, peroxisome	25.66	61.37
Bra027014.1-P	Field mustard	cytosol	44.56	55.73
CDY46926	Canola	cytosol	44.56	55.73
CDY31848	Canola	nucleus	44.33	55.21
KRH39215	Soybean	nucleus	52.35	54.47
PGSC0003DMT400095293	Potato	nucleus	50.29	54.06
AT1G62830.1	Thale cress	nucleus	50.63	52.37
KRH48462	Soybean	nucleus, plastid	21.19	50.27
HORVU7Hr1G073020.3	Barley	cytosol, mitochondrion, peroxisome	39.63	47.79
HORVU2Hr1G096300.1	Barley	plastid	23.25	44.62
HORVU2Hr1G121060.1	Barley	plastid	17.41	31.08
HORVU2Hr1G121050.1	Barley	peroxisome	17.07	30.28
HORVU3Hr1G066920.4	Barley	extracellular	15.69	26.55
HORVU7Hr1G090410.1	Barley	vacuole	14.66	25.45
HORVU7Hr1G118260.1	Barley	plasma membrane, vacuole	13.97	24.5
HORVU7Hr1G118240.1	Barley	endoplasmic reticulum, golgi, vacuole	13.86	24.44
HORVU6Hr1G042330.1	Barley	cytosol	10.19	23.8
HORVU1Hr1G057290.1	Barley	cytosol	3.32	22.48
HORVU4Hr1G071450.1	Barley	mitochondrion	14.32	22.01
HORVU6Hr1G091060.1	Barley	cytosol	10.77	21.61
HORVU6Hr1G092910.1	Barley	nucleus	28.29	13.59

Protein Annotations

Gene3D:1.10.10.10	MapMan:12.3.3.8.1	Gene3D:3.50.50.60	Gene3D:3.90.660.10	UniProt:A0A287UTK0	InterPro:Amino_oxidase
InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016491
GO:GO:0016575	GO:GO:0019538	GO:GO:0048364	GO:GO:0051568	GO:GO:0055114	EnsemblPlantsGene:HORVU6Hr1G078160
EnsemblPlants:HORVU6Hr1G078160.1	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR036188	InterPro:IPR036388	PFAM:PF01593
PFAM:PF04433	PFscan:PS50934	PANTHER:PTHR10742	PANTHER:PTHR10742:SF353	SUPFAM:SSF46689	SUPFAM:SSF51905
SUPFAM:SSF54373	InterPro:SWIRM	UniParc:UPI000B46212E	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chrchr6H:-:533206705..533210273

Molecular Weight (calculated)

93417.1 Da

IEP (calculated)

5.641

GRAVY (calculated)

-0.148

Length

873 amino acids

Sequence
(BLAST)

001: RKNNSMGLFP PESRPSLGHR TVLALNQPLN PPPNSQIQSP SSPHPSPETP MDEANEAQPP PDAPEAAGHL ALVPMEQDEA AAAAEPMEDD AAGGDAAASA
101: EPMEEDAPTS SPTPSAPSTT AAVDDSTVAR KRRRRKKQFP GMIPTAGVRV LRASSSSGAT AAHLAGIPRR RGRPPTNSSL RLARELDSEA TIALAAGFPA
201: DTLSEDEVAA AVIPVIGGTD QANYLVVRNH ILALWRSNPL SPVASNAALA SIRAEHAPLV AAAHSFLSDH AYINFGLAPS IVSLPPIPPP SHPPPSVLIV
301: GAGFAGLAAA RHLMSLGFKV AIVEGRLRPG GRVFTKTMRS SAADYPDIAA SADLGGSVLT GINGNPLGVI ARQLGFPLHK VRDKCPLYLP DGRPVDPDMD
401: GRVEAAFNQL LDKVCQLRQV IADSVPHGVD VSLGMALEAF RAAHGVAAEP EERMLLDWHL ANLEYANAAP LADLSMAFWD QDDPYEMGGD HCFIPGGNSQ
501: FVRALADGVP IFYGQNVRRI QYGCDGVLVY TDKQTFRGDM ALCTVPLGVL KKGDIDFVPQ LPAQKREAIQ RLGFGLLNKV VMLFPFDFWD GRIDTFGHLT
601: EDSSQRGEFF LFYSYSSVSG GPLLVALVAG ESAISFEKKS PMENVEKVLD TLKKIFSPMG IEVPNPLQAI CTRWGTDRFS YGSYSHVAIG SSGDDYDILA
701: ESVADRVFFA GEATNRRYPA TMHGALLSGY REAANIVRAA RKRAKKVDSS EKIDIIYEVR DIVKDDNIDL DDLFRTPDVA FGGFSVLHDP SISEPDSASL
801: LRVGIGARKL GSGSLFLYGL IMRKNVTELA AMEGDEQRLS TLYRDFGTKL VGLDGLGDAG ESLISRIKAA SKK

Best Arabidopsis Sequence Match ( AT1G62830.1 )
(BLAST)

001: MSTETKETRP ETKPEDLGTH TTVDVPGEEP LGELIADDVN EVVSDASATE TDFSLSPSQS EQNIEEDGQN SLDDQSPLTE LQPLPLPPPL PVEARISESL
101: GEEESSDLVT EQQSQNPNAA EPGPRARKRR RRKRFFTEIN ANPAFSRNRR TSVGKEVDSE ALIAMSVGFP VYSLTEEEIE ANVVSIIGGK DQANYIVVRN
201: HIIALWRSNV SNWLTRDHAL ESIRAEHKTL VDTAYNFLLE HGYINFGLAP VIKEAKLRSF DGVEPPNVVV VGAGLAGLVA ARQLLSMGFR VLVLEGRDRP
301: GGRVKTRKMK GGDGVEAMAD VGGSVLTGIN GNPLGVLARQ LGLPLHKVRD ICPLYLPNGE LADASVDSKI EASFNKLLDR VCKLRQSMIE ENKSVDVPLG
401: EALETFRLVY GVAEDQQERM LLDWHLANLE YANATLLGNL SMAYWDQDDP YEMGGDHCFI PGGNEIFVHA LAENLPIFYG STVESIRYGS NGVLVYTGNK
501: EFHCDMALCT VPLGVLKKGS IEFYPELPHK KKEAIQRLGF GLLNKVAMLF PCNFWGEEID TFGRLTEDPS TRGEFFLFYS YSSVSGGPLL VALVAGDAAE
601: RFETLSPTDS VKRVLQILRG IYHPKGIVVP DPVQALCSRW GQDKFSYGSY SYVAVGSSGD DYDILAESVG DGRVFFAGEA TNRQYPATMH GAFLSGMREA
701: ANILRVARRR ASSSALNPNQ ICIDKEEEVD EEEDRCLDQL FETPDLTFGN FSVLFTPNSD EPESMSLLRV RIQMEKPESG LWLYGLVTRK QAIELGEMDG
801: DELRNEYLRE KLGLVPVERK SLSQEGESMI SSLKAARLNR QIFD

Arabidopsis Description

LDL1Lysine-specific histone demethylase 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VXV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.