Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22771 | Canola | nucleus | 98.48 | 98.6 |
| AT4G16310.4 | Thale cress | nucleus | 82.33 | 79.85 |
| PGSC0003DMT400009649 | Potato | cytosol | 44.08 | 53.7 |
| GSMUA_Achr2P09900_001 | Banana | cytosol | 44.33 | 49.47 |
| Os10t0532150-00 | Rice | cytosol, nucleus, plastid | 7.16 | 45.56 |
| KRH17390 | Soybean | nucleus | 52.18 | 43.51 |
| KRH05909 | Soybean | nucleus | 51.55 | 42.68 |
| Solyc04g081100.2.1 | Tomato | nucleus | 50.79 | 38.59 |
| EER94594 | Sorghum | nucleus | 43.45 | 38.13 |
| TraesCS6B01G449900.1 | Wheat | nucleus | 44.33 | 37.92 |
| Os10t0532100-01 | Rice | nucleus | 28.94 | 37.83 |
| TraesCS6D01G389200.1 | Wheat | nucleus | 44.33 | 37.8 |
| TraesCS6A01G405500.2 | Wheat | nucleus | 44.33 | 37.8 |
| Zm00001d029714_P001 | Maize | extracellular | 43.38 | 37.76 |
| HORVU6Hr1G092910.1 | Barley | nucleus | 42.69 | 37.07 |
| Bra000284.1-P | Field mustard | cytosol | 10.64 | 35.0 |
| Bra039742.1-P | Field mustard | cytosol, peroxisome, plastid | 10.83 | 34.41 |
| Bra004737.1-P | Field mustard | peroxisome | 10.64 | 34.29 |
| Bra037741.1-P | Field mustard | peroxisome | 10.51 | 34.23 |
| Bra021500.1-P | Field mustard | cytosol | 15.58 | 33.65 |
| Bra003362.1-P | Field mustard | cytosol | 10.32 | 33.33 |
| Bra027014.1-P | Field mustard | cytosol | 13.81 | 31.23 |
| Bra001357.1-P | Field mustard | nucleus, plastid | 15.96 | 27.39 |
| Bra024137.1-P | Field mustard | mitochondrion | 8.36 | 25.63 |
| Bra011132.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 8.23 | 24.03 |
| Bra006210.1-P | Field mustard | extracellular | 6.9 | 23.14 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:12.3.3.8.2 | Gene3D:3.50.50.60 | Gene3D:3.90.660.10 | InterPro:Amino_oxidase | EnsemblPlantsGene:Bra040571 |
| EnsemblPlants:Bra040571.1 | EnsemblPlants:Bra040571.1-P | ncoils:Coil | InterPro:FAD/NAD-bd_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016491 | GO:GO:0055114 | InterPro:Homeobox-like_sf | InterPro:IPR007526 | InterPro:IPR035441 | InterPro:IPR036188 |
| InterPro:IPR036388 | UniProt:M4FHJ3 | PFAM:PF01593 | PFAM:PF04433 | PRINTS:PR00419 | PFscan:PS50934 |
| PANTHER:PTHR10742 | PANTHER:PTHR10742:SF354 | SUPFAM:SSF46689 | SUPFAM:SSF47676 | SUPFAM:SSF51905 | SUPFAM:SSF54373 |
| InterPro:SWIRM | InterPro:TFIIS/LEDGF_dom_sf | UniParc:UPI000253EE1F | InterPro:WH-like_DNA-bd_sf | SEG:seg | : |
Description
AT4G16310 (E=0.0) LDL3 | LDL3 (LSD1-LIKE3); amine oxidase/ electron carrier/ oxidoreductase
Coordinates
chrScaffold000219:+:17022..22955
Molecular Weight (calculated)
174289.0 Da
IEP (calculated)
6.518
GRAVY (calculated)
-0.502
Length
1579 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDGKGKKCGS KKESKVFDFE DDADDDEPIG SLLKVMKHKT ATKSKVETQT TGKQMKKLTH VRKDSEDMDD TLASFRKRLK GHKKRVRNDK DVPPVDTVTL
0101: IPSPDMADDA SELGREGTVN EKSLDDIYNT KVKSSTRSVI LEKEADADDK SKRPLPNVDV YPPVDRKDVS VLSPDEHIHL GEPESESGHF REEKIVMCVC
0201: GIQFNFEDRS LESNSEVAIC QKCKRSSHRD ASNGGGIQVN TLKDGTAEAS PVSVTPYEDE DFRGDAVSLP NSGKPSTLQR PERIARKRKH ENMVYGEDMN
0301: WENEQGFLDC QSDKSFKGSD KCDFGPFISK EIEIGRAAAV AAGLKAQSVS PVEKTILKEV LKRKGSHQEY LRCRNSILGL WSKNVSRILP VTECVVGLSE
0401: SEFPSAYLIR EVYKFLDQRG YINTGVSSVR GKGCPSINHD DDLSQGKKLE ESYMASVAYS EGDTFIFGQV KAVESTSEGK NCALQNDETE IVGCATSAML
0501: GSTSKACEAS IIEDCKHSVS INGLPPDANA PKVEKCPETV SVPKTALSST PSSANCNQIS GRDCVQCEVE DEKKVIVIGA GPAGLTAARH LQRQGFSVTV
0601: LEARSRVGGR VFTDRSSLSV PVDLGASIIT GIEADVPSER MPDPSALVCN QLGLELSVLH GFCPLYDTVT GEKVPPELDD ALQGEFNSLI DDMDLLVEEI
0701: GKDRANKMSL EDGLEYGLQR LRMPHEKVNI ERFGIGNSIN GSFSRTGITG TFKHDGRLKK DFLNPLERRV MNWHFAHTEY GCAAVLKEVS LSNWNQDEFY
0801: GGFGGPHAMI KGGYSRVAES LAEGLDIRLN NVVSEVSYTS DVSAMHNNKH KVIVSTSNGG EYLGDAVLVT VPLGCLKAET IKFSPPLPDW KYSSIKQLGF
0901: GVLNKVVLEF SKVFWDDSLD YFGATAEETD QRGECFMFWN VKKTVGAPVL IALVVGKAAV DYKDKSKSEH VNHAMMVLRK LFGGDLVPDP VASVVTDWGA
1001: DPYSYGAYSY VAIGASGEDY DVLGRPVQNC LFFAGEATCK EHPDTVGGAM MTGVREAVRI IDILRSGNDY TAEIETLEKA QRKSVSIRDE VSDLIKRLEV
1101: VELSNVLARH SLLRNMFFSA KTTVGRLHLA KELLNLPGET LKSFAGTKEG LTVLNSWILD SMGKNGTQLL RHCVHILVRV TSDLFAVRLS GIGKTVKEKV
1201: CAHTSRDIRA IASQLVNVWL ELYRKEKANR EMKSLRRTNP TNISRIRRKQ NSEDADSKGN LSNGNDTTTD GEIEDNQLPM SEEEKAVFAT AEAARAFSEA
1301: YQSTSLQLPK IPSFHKFARR EQYAKMDESD FKKKFPGNVL GRQDCMSEID SRNCKVRDWY DFPASCLDPD SSRVQVDNCS QRSHSNELGS HSKFRECSRE
1401: SGAAETSVFT GAWVDTGGSS DGVKDYNAID RWQSQAAAAD PEFFNRALHM KDEEGSMACS TGPPSWKHDQ PANEGSMSQV TVNKEPRKSH IRGADRLKQG
1501: VVDFVASLLM TPYRAKKIDR DVYKSIMKKT ATKVMQQTTD AEKAMAVPQF LDSKRKNKIR DFVDKQVDKY IAMAKVAKP
0101: IPSPDMADDA SELGREGTVN EKSLDDIYNT KVKSSTRSVI LEKEADADDK SKRPLPNVDV YPPVDRKDVS VLSPDEHIHL GEPESESGHF REEKIVMCVC
0201: GIQFNFEDRS LESNSEVAIC QKCKRSSHRD ASNGGGIQVN TLKDGTAEAS PVSVTPYEDE DFRGDAVSLP NSGKPSTLQR PERIARKRKH ENMVYGEDMN
0301: WENEQGFLDC QSDKSFKGSD KCDFGPFISK EIEIGRAAAV AAGLKAQSVS PVEKTILKEV LKRKGSHQEY LRCRNSILGL WSKNVSRILP VTECVVGLSE
0401: SEFPSAYLIR EVYKFLDQRG YINTGVSSVR GKGCPSINHD DDLSQGKKLE ESYMASVAYS EGDTFIFGQV KAVESTSEGK NCALQNDETE IVGCATSAML
0501: GSTSKACEAS IIEDCKHSVS INGLPPDANA PKVEKCPETV SVPKTALSST PSSANCNQIS GRDCVQCEVE DEKKVIVIGA GPAGLTAARH LQRQGFSVTV
0601: LEARSRVGGR VFTDRSSLSV PVDLGASIIT GIEADVPSER MPDPSALVCN QLGLELSVLH GFCPLYDTVT GEKVPPELDD ALQGEFNSLI DDMDLLVEEI
0701: GKDRANKMSL EDGLEYGLQR LRMPHEKVNI ERFGIGNSIN GSFSRTGITG TFKHDGRLKK DFLNPLERRV MNWHFAHTEY GCAAVLKEVS LSNWNQDEFY
0801: GGFGGPHAMI KGGYSRVAES LAEGLDIRLN NVVSEVSYTS DVSAMHNNKH KVIVSTSNGG EYLGDAVLVT VPLGCLKAET IKFSPPLPDW KYSSIKQLGF
0901: GVLNKVVLEF SKVFWDDSLD YFGATAEETD QRGECFMFWN VKKTVGAPVL IALVVGKAAV DYKDKSKSEH VNHAMMVLRK LFGGDLVPDP VASVVTDWGA
1001: DPYSYGAYSY VAIGASGEDY DVLGRPVQNC LFFAGEATCK EHPDTVGGAM MTGVREAVRI IDILRSGNDY TAEIETLEKA QRKSVSIRDE VSDLIKRLEV
1101: VELSNVLARH SLLRNMFFSA KTTVGRLHLA KELLNLPGET LKSFAGTKEG LTVLNSWILD SMGKNGTQLL RHCVHILVRV TSDLFAVRLS GIGKTVKEKV
1201: CAHTSRDIRA IASQLVNVWL ELYRKEKANR EMKSLRRTNP TNISRIRRKQ NSEDADSKGN LSNGNDTTTD GEIEDNQLPM SEEEKAVFAT AEAARAFSEA
1301: YQSTSLQLPK IPSFHKFARR EQYAKMDESD FKKKFPGNVL GRQDCMSEID SRNCKVRDWY DFPASCLDPD SSRVQVDNCS QRSHSNELGS HSKFRECSRE
1401: SGAAETSVFT GAWVDTGGSS DGVKDYNAID RWQSQAAAAD PEFFNRALHM KDEEGSMACS TGPPSWKHDQ PANEGSMSQV TVNKEPRKSH IRGADRLKQG
1501: VVDFVASLLM TPYRAKKIDR DVYKSIMKKT ATKVMQQTTD AEKAMAVPQF LDSKRKNKIR DFVDKQVDKY IAMAKVAKP
0001: MDGKEKKSGS KRGSKVFQFD DDADDDEPIG SLLEIMKHKS SKKDKVETES TGKQRQKQVV EKKLSALGKD SEDMDDTLAS FRKRLKGNKK GVESGTSRVR
0101: NHEGVDTVTN SNLKPIEEAN KNEVQSVLLR ENGASNSIQK CASETGTLLH KFSGKDKAAS PSHEKVETVS SEKEADVFHQ ITKEESEIPM SEKAVELSRV
0201: SVPMPDVHGE VNCTIAPDKH IHLGEPTSES GYYREKNLVM CDCGTQFNFE DRSFESNTQV TLCQKCKYSS HHNASNGGGI QVNTLEDGTA QASPVSIIPC
0301: EDENFRGDAI SLPNSGKPST LQRPERIAKK RKLGNMVYEG DVKWENEQGF LDCQSDKSFK GSDKCGFVPS ISKEIEIGRA AAVTAGLKAQ SVSPIEKIIL
0401: KEVLKRKGSN QEYLVCRNSI LGLWSKNVSR ILPVTECGVT GGPSESELPS ASLIREVYKF LDQRGYINAG ISSVNGKAAS STNQDYDLLQ GRQLEESSMA
0501: SVADSEEGVA FILGQVKAVE STSEGKKCAL QNDERDLVGC ATSEMLESIS KKCEASIIDD NKRSVSMNAL QDSTASNVEK HPETFSVAKP ALSSTLSSAH
0601: SNQMRGRDCV PCEVIDEKKV IVIGAGPAGL TAARHLQRQG FSVTVLEARS RVGGRVFTDR SSLSVPVDLG ASIITGIEAD VPSERMPDPS VLVCNQLGLE
0701: LSVLHGFCPL YDTVTGKKVP AELDDALQAE FNSLIDDVDL LVEEIGKERA NKMSLEDGLE YGLQRLRMPH DKVNIDKFGL LNSSSKTGIR GPFMQDESWK
0801: DDFLNPLERR VMNWHFAHTE YGCAAVLKEV SLPHWNQDEF YGGFGGPHAM IKGGYSRVVE SLAEGLDIHL NKIVSDVSYV SDVSAMDNSK HKVRVSTSNG
0901: CEYLGDAVLV TVPLGCLKAE TIKFSPPLPD WKYASIKQLG FGVLNKVVLE FPTVFWDDSV DYFGATAEET DLRGECFMFW NVKKTVGAPV LIALVVGKAA
1001: FEYTNKSKSE HVNHAMMVLR KLFGGDLVPD PVASVVTDWG TDPYSYGAYS YVAIGASGED YDVLGRPVQN CLFFAGEATC KEHPDTVGGA MMTGVREAVR
1101: IIDILRSGND YTAEIETLEK AQRKSVPVRD EVRDLIKRLE VVELSNVLAR QSLLRNMFFS AKTTVGRLHL AKELLNLPGE TLKSFAGTKE GLAVLNSWIL
1201: DSMGKNGTQL LRHCVHILVR VTSDLFALRL SGIGKTVKEK VCAHTSRDIR AIASQLVNVW LDLYRKEKAN SGKKSLRQAN TTNTSRIRRK LNSPDTDSKG
1301: KLSNGNDVKT DEEFEDNQLP MSEEEKAVFA EAEAARAAAE AAAKAFSEAY HNTSLQLPKI PSFHKFARRE QYAKMDESDF RKKFPGNVLG RQDCMSEIDS
1401: RNCKVRDWYD FPASCLDLDS ARIPVDNYSQ PSHSNELVSH SKFRECSGES VAADTSFLTG AWVDTGGSSD GFKDSQAIDR WQSQAAAADP EFFNRTLHIK
1501: DEEDSIACST GPPSWKHDQR ANECSVSQVT VNKEPHKNHI RSADRLKQGV VDFVASLLMA PYRAKKIDRD VYKSIMKKTA TKVMQHTTDV EKAMAVTQFL
1601: DSKRKNKIRD FVDKQVDKYM VIPQVPKP
0101: NHEGVDTVTN SNLKPIEEAN KNEVQSVLLR ENGASNSIQK CASETGTLLH KFSGKDKAAS PSHEKVETVS SEKEADVFHQ ITKEESEIPM SEKAVELSRV
0201: SVPMPDVHGE VNCTIAPDKH IHLGEPTSES GYYREKNLVM CDCGTQFNFE DRSFESNTQV TLCQKCKYSS HHNASNGGGI QVNTLEDGTA QASPVSIIPC
0301: EDENFRGDAI SLPNSGKPST LQRPERIAKK RKLGNMVYEG DVKWENEQGF LDCQSDKSFK GSDKCGFVPS ISKEIEIGRA AAVTAGLKAQ SVSPIEKIIL
0401: KEVLKRKGSN QEYLVCRNSI LGLWSKNVSR ILPVTECGVT GGPSESELPS ASLIREVYKF LDQRGYINAG ISSVNGKAAS STNQDYDLLQ GRQLEESSMA
0501: SVADSEEGVA FILGQVKAVE STSEGKKCAL QNDERDLVGC ATSEMLESIS KKCEASIIDD NKRSVSMNAL QDSTASNVEK HPETFSVAKP ALSSTLSSAH
0601: SNQMRGRDCV PCEVIDEKKV IVIGAGPAGL TAARHLQRQG FSVTVLEARS RVGGRVFTDR SSLSVPVDLG ASIITGIEAD VPSERMPDPS VLVCNQLGLE
0701: LSVLHGFCPL YDTVTGKKVP AELDDALQAE FNSLIDDVDL LVEEIGKERA NKMSLEDGLE YGLQRLRMPH DKVNIDKFGL LNSSSKTGIR GPFMQDESWK
0801: DDFLNPLERR VMNWHFAHTE YGCAAVLKEV SLPHWNQDEF YGGFGGPHAM IKGGYSRVVE SLAEGLDIHL NKIVSDVSYV SDVSAMDNSK HKVRVSTSNG
0901: CEYLGDAVLV TVPLGCLKAE TIKFSPPLPD WKYASIKQLG FGVLNKVVLE FPTVFWDDSV DYFGATAEET DLRGECFMFW NVKKTVGAPV LIALVVGKAA
1001: FEYTNKSKSE HVNHAMMVLR KLFGGDLVPD PVASVVTDWG TDPYSYGAYS YVAIGASGED YDVLGRPVQN CLFFAGEATC KEHPDTVGGA MMTGVREAVR
1101: IIDILRSGND YTAEIETLEK AQRKSVPVRD EVRDLIKRLE VVELSNVLAR QSLLRNMFFS AKTTVGRLHL AKELLNLPGE TLKSFAGTKE GLAVLNSWIL
1201: DSMGKNGTQL LRHCVHILVR VTSDLFALRL SGIGKTVKEK VCAHTSRDIR AIASQLVNVW LDLYRKEKAN SGKKSLRQAN TTNTSRIRRK LNSPDTDSKG
1301: KLSNGNDVKT DEEFEDNQLP MSEEEKAVFA EAEAARAAAE AAAKAFSEAY HNTSLQLPKI PSFHKFARRE QYAKMDESDF RKKFPGNVLG RQDCMSEIDS
1401: RNCKVRDWYD FPASCLDLDS ARIPVDNYSQ PSHSNELVSH SKFRECSGES VAADTSFLTG AWVDTGGSSD GFKDSQAIDR WQSQAAAADP EFFNRTLHIK
1501: DEEDSIACST GPPSWKHDQR ANECSVSQVT VNKEPHKNHI RSADRLKQGV VDFVASLLMA PYRAKKIDRD VYKSIMKKTA TKVMQHTTDV EKAMAVTQFL
1601: DSKRKNKIRD FVDKQVDKYM VIPQVPKP
Arabidopsis Description
LDL3Lysine-specific histone demethylase 1 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JLS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.