Factsheet for AT4G16310.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42542	Canola	nucleus	80.59	82.36
Bra040571.1-P	Field mustard	nucleus	79.85	82.33
CDY22771	Canola	nucleus	79.73	82.31
PGSC0003DMT400009649	Potato	cytosol	44.04	55.32
GSMUA_Achr2P09900_001	Banana	cytosol	44.16	50.81
Os10t0532150-00	Rice	cytosol, nucleus, plastid	6.88	45.16
KRH17390	Soybean	nucleus	52.4	45.04
KRH05909	Soybean	nucleus	52.03	44.42
Solyc04g081100.2.1	Tomato	nucleus	51.6	40.42
EER94594	Sorghum	nucleus	43.37	39.24
Zm00001d029714_P001	Maize	extracellular	43.61	39.14
Os10t0532100-01	Rice	nucleus	28.62	38.58
TraesCS6B01G449900.1	Wheat	nucleus	43.49	38.35
TraesCS6A01G405500.2	Wheat	nucleus	43.61	38.34
TraesCS6D01G389200.1	Wheat	nucleus	43.43	38.17
HORVU6Hr1G092910.1	Barley	nucleus	42.2	37.79
AT2G43020.1	Thale cress	peroxisome	10.32	34.29
AT3G59050.1	Thale cress	cytosol, nucleus, peroxisome	10.07	33.61
AT3G13682.1	Thale cress	cytosol	15.36	33.51
AT1G65840.1	Thale cress	cytosol, peroxisome, plastid	10.2	33.4
AT1G62830.1	Thale cress	nucleus	14.8	28.55
AT3G10390.3	Thale cress	plastid	15.29	26.6
AT4G29720.1	Thale cress	mitochondrion	7.92	24.2
AT5G13700.1	Thale cress	extracellular	6.33	21.82

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.930.10	MapMan:12.3.3.8.2	Gene3D:3.50.50.60	Gene3D:3.90.660.10	EntrezGene:827325
ProteinID:AEE83730.1	ProteinID:ANM66788.1	ProteinID:ANM66789.1	ProteinID:ANM66790.1	ProteinID:ANM66791.1	ArrayExpress:AT4G16310
EnsemblPlantsGene:AT4G16310	RefSeq:AT4G16310	TAIR:AT4G16310	RefSeq:AT4G16310-TAIR-G	EnsemblPlants:AT4G16310.4	EMBL:AY924818
InterPro:Amino_oxidase	Unigene:At.54355	ProteinID:CAB10408.1	ProteinID:CAB10409.1	ProteinID:CAB78673.1	ProteinID:CAB78674.1
EMBL:EF442804	UniProt:F4JLS1	InterPro:FAD/NAD-bd_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016491	GO:GO:0016569	GO:GO:0055114	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR035441
InterPro:IPR036188	InterPro:IPR036388	Symbol:LDL3	RefSeq:NP_001319957.1	RefSeq:NP_001328664.1	RefSeq:NP_001328665.1
RefSeq:NP_001328666.1	RefSeq:NP_193364.5	PFAM:PF01593	PFAM:PF04433	PRINTS:PR00419	PFscan:PS50934
PANTHER:PTHR10742	PANTHER:PTHR10742:SF354	SUPFAM:SSF46689	SUPFAM:SSF47676	SUPFAM:SSF51905	SUPFAM:SSF54373
InterPro:SWIRM	InterPro:TFIIS/LEDGF_dom_sf	UniParc:UPI0001A7B0E4	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

LDL3Lysine-specific histone demethylase 1 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JLS1]

Coordinates

chr4:+:9218045..9225944

Molecular Weight (calculated)

179412.0 Da

IEP (calculated)

6.455

GRAVY (calculated)

-0.470

Length

1628 amino acids

Sequence
(BLAST)

0001: MDGKEKKSGS KRGSKVFQFD DDADDDEPIG SLLEIMKHKS SKKDKVETES TGKQRQKQVV EKKLSALGKD SEDMDDTLAS FRKRLKGNKK GVESGTSRVR
0101: NHEGVDTVTN SNLKPIEEAN KNEVQSVLLR ENGASNSIQK CASETGTLLH KFSGKDKAAS PSHEKVETVS SEKEADVFHQ ITKEESEIPM SEKAVELSRV
0201: SVPMPDVHGE VNCTIAPDKH IHLGEPTSES GYYREKNLVM CDCGTQFNFE DRSFESNTQV TLCQKCKYSS HHNASNGGGI QVNTLEDGTA QASPVSIIPC
0301: EDENFRGDAI SLPNSGKPST LQRPERIAKK RKLGNMVYEG DVKWENEQGF LDCQSDKSFK GSDKCGFVPS ISKEIEIGRA AAVTAGLKAQ SVSPIEKIIL
0401: KEVLKRKGSN QEYLVCRNSI LGLWSKNVSR ILPVTECGVT GGPSESELPS ASLIREVYKF LDQRGYINAG ISSVNGKAAS STNQDYDLLQ GRQLEESSMA
0501: SVADSEEGVA FILGQVKAVE STSEGKKCAL QNDERDLVGC ATSEMLESIS KKCEASIIDD NKRSVSMNAL QDSTASNVEK HPETFSVAKP ALSSTLSSAH
0601: SNQMRGRDCV PCEVIDEKKV IVIGAGPAGL TAARHLQRQG FSVTVLEARS RVGGRVFTDR SSLSVPVDLG ASIITGIEAD VPSERMPDPS VLVCNQLGLE
0701: LSVLHGFCPL YDTVTGKKVP AELDDALQAE FNSLIDDVDL LVEEIGKERA NKMSLEDGLE YGLQRLRMPH DKVNIDKFGL LNSSSKTGIR GPFMQDESWK
0801: DDFLNPLERR VMNWHFAHTE YGCAAVLKEV SLPHWNQDEF YGGFGGPHAM IKGGYSRVVE SLAEGLDIHL NKIVSDVSYV SDVSAMDNSK HKVRVSTSNG
0901: CEYLGDAVLV TVPLGCLKAE TIKFSPPLPD WKYASIKQLG FGVLNKVVLE FPTVFWDDSV DYFGATAEET DLRGECFMFW NVKKTVGAPV LIALVVGKAA
1001: FEYTNKSKSE HVNHAMMVLR KLFGGDLVPD PVASVVTDWG TDPYSYGAYS YVAIGASGED YDVLGRPVQN CLFFAGEATC KEHPDTVGGA MMTGVREAVR
1101: IIDILRSGND YTAEIETLEK AQRKSVPVRD EVRDLIKRLE VVELSNVLAR QSLLRNMFFS AKTTVGRLHL AKELLNLPGE TLKSFAGTKE GLAVLNSWIL
1201: DSMGKNGTQL LRHCVHILVR VTSDLFALRL SGIGKTVKEK VCAHTSRDIR AIASQLVNVW LDLYRKEKAN SGKKSLRQAN TTNTSRIRRK LNSPDTDSKG
1301: KLSNGNDVKT DEEFEDNQLP MSEEEKAVFA EAEAARAAAE AAAKAFSEAY HNTSLQLPKI PSFHKFARRE QYAKMDESDF RKKFPGNVLG RQDCMSEIDS
1401: RNCKVRDWYD FPASCLDLDS ARIPVDNYSQ PSHSNELVSH SKFRECSGES VAADTSFLTG AWVDTGGSSD GFKDSQAIDR WQSQAAAADP EFFNRTLHIK
1501: DEEDSIACST GPPSWKHDQR ANECSVSQVT VNKEPHKNHI RSADRLKQGV VDFVASLLMA PYRAKKIDRD VYKSIMKKTA TKVMQHTTDV EKAMAVTQFL
1601: DSKRKNKIRD FVDKQVDKYM VIPQVPKP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.