Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G389200.1 | Wheat | nucleus | 96.26 | 95.95 |
| TraesCS6A01G405500.2 | Wheat | nucleus | 95.45 | 95.14 |
| HORVU6Hr1G092910.1 | Barley | nucleus | 91.12 | 92.52 |
| Os10t0532150-00 | Rice | cytosol, nucleus, plastid | 10.46 | 77.82 |
| Os10t0532100-01 | Rice | nucleus | 45.29 | 69.21 |
| EER94594 | Sorghum | nucleus | 63.06 | 64.7 |
| Zm00001d029714_P001 | Maize | extracellular | 62.78 | 63.89 |
| GSMUA_Achr2P09900_001 | Banana | cytosol | 42.85 | 55.9 |
| PGSC0003DMT400009649 | Potato | cytosol | 36.57 | 52.08 |
| CDY22771 | Canola | nucleus | 38.19 | 44.71 |
| CDY42542 | Canola | nucleus | 38.35 | 44.44 |
| Bra040571.1-P | Field mustard | nucleus | 37.92 | 44.33 |
| AT4G16310.4 | Thale cress | nucleus | 38.35 | 43.49 |
| KRH17390 | Soybean | nucleus | 43.28 | 42.19 |
| KRH05909 | Soybean | nucleus | 43.23 | 41.85 |
| Solyc04g081100.2.1 | Tomato | nucleus | 42.42 | 37.68 |
| TraesCS2B01G490100.1 | Wheat | peroxisome, plastid | 9.1 | 34.71 |
| TraesCS2B01G579100.1 | Wheat | plastid | 8.88 | 33.47 |
| TraesCS2B01G579000.1 | Wheat | peroxisome | 8.99 | 31.56 |
| TraesCS2B01G425100.1 | Wheat | plastid | 13.49 | 30.86 |
| TraesCS7B01G206700.1 | Wheat | cytosol, nucleus, plasma membrane, plastid | 12.46 | 30.26 |
| TraesCS6B01G348300.1 | Wheat | nucleus | 13.38 | 29.94 |
| TraesCS4B01G385300.1 | Wheat | endoplasmic reticulum | 6.77 | 25.99 |
| TraesCS7B01G461800.1 | Wheat | plasma membrane, vacuole | 6.93 | 25.86 |
| TraesCS3B01G280200.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole | 6.99 | 25.44 |
| TraesCS4B01G265900.1 | Wheat | vacuole | 6.66 | 24.95 |
| TraesCS7B01G280700.1 | Wheat | cytosol | 6.23 | 24.11 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:12.3.3.8.2 | Gene3D:3.50.50.60 | Gene3D:3.90.660.10 | InterPro:Amino_oxidase | ncoils:Coil |
| InterPro:FAD/NAD-bd_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:Homeobox-like_sf |
| InterPro:IPR007526 | InterPro:IPR035441 | InterPro:IPR036188 | InterPro:IPR036388 | PFAM:PF01593 | PFAM:PF04433 |
| PRINTS:PR00419 | PFscan:PS50934 | PANTHER:PTHR10742 | PANTHER:PTHR10742:SF354 | SUPFAM:SSF46689 | SUPFAM:SSF47676 |
| SUPFAM:SSF51905 | SUPFAM:SSF54373 | InterPro:SWIRM | InterPro:TFIIS/LEDGF_dom_sf | EnsemblPlantsGene:TraesCS6B01G449900 | EnsemblPlants:TraesCS6B01G449900.1 |
| InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:708938934..708946379
Molecular Weight (calculated)
199260.0 Da
IEP (calculated)
5.928
GRAVY (calculated)
-0.489
Length
1846 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDDTLANIRK KLKRLKKGKD EDDAVDAPAV PDGGEAVAVA VAAGPEDLQG GGDVEDMGEG VADEGGDLEA AANAVPGEDD GVKGPGGDLG LGDSLSVLFR
0101: KPGRKPRQQA SKDEEAEGVE AADSQAEEAL NGGSGGLASD ETAKGTKKRR RRRTKAEMEE MRAAVAAENY AKAMAGDGSP RRSKAKPKAA YSDRRSRAAA
0201: RRAVGESPVG ELPIGELAAP GPPPDLERKP DEKEEAVDKE EAADDGLSLG ETLLQDMETS RIVEDGSRNS SDGASHCVEV PARADNCIAL NPCSGGEPAE
0301: KASHSAANAS ADGVSDAQTC SETLAEDINA DAGFSQDKPP APTIKRKPGR KPKEAPKKPV RRKELPSVSA DAKPVEIAES DASSKQRRRK NKFLLARSTT
0401: VQSNSSLDNK AGSTGDVKYG NIKPNAAVPT EESLDQPAAY GVRGSRAAKD SRASHNMAAS AKEIDITDVA APSNFEDMEN TSKVKRLARN TRKRKHGDMA
0501: YEGDDDWETL MHEQGLFSNP SAGFADQSVK PKDKIKALEV LENRGVAAVS AGLMAEAVSP MEKIKFKDVL KRKGGLKDYL ECRNMILSFW NKDVKHLLDL
0601: ADCGLSNAPM EDDSPRQTLI RDVYCFLDQN GYINAGIASA KATKAHETLC SEVVEVAKLN ELPKMDTVMV EGDIVAASLQ NKDHDYGALG PLTEESKENN
0701: VPDAHCDAQE LIPHLQSKEQ AFEEKNLDVS TEGGDALLPP INITSVGNTE GPSLDKPEAA VIKHPRNNCE VNHKVESGGH GKKIIIVGAG PAGLTAARHL
0801: QRQGFAVTVL EARDRIGGRV YTDRTSLSVP VDLGASIITG VEADIATERR ADPSSLICSQ LGLELTVLKS ACPLYDVVTG NKVPDELDDE LESEYNGLLD
0901: EMEQLFEQNG ESALGLSLED GLEYTLRKKR AAHAISSVGH DDQLISMNSR GGADISKNAS TEKEMAHCGE DGKIDVLSPL ERRVMNWHFA HLEYGCAAML
1001: KSVSLPYWNQ DDVYGGFGGP HCMIKGGYGA VLQSLAEGLD VQLNHVVTEV TYRSDESDAS GISGKTVKVS TSNGAEFEGD SVLITVPLGC LKAHTIKFSP
1101: SLPDWKTSSI DRLGFGVLNK IVLEFSEVFW DENVDYFGAT AEQTDLRGQC FMFWNLKKTV GAPVIIALLV GKAAIDGQGI SSDAHVSHAM VVLRKLFTDA
1201: AVPDPVASVV TNWGLDPFSR GAYSYVAVGA SGQDYDIIGR PVANCLFFAG EATCKEHPDT VGGAILSGLR EAVRIIDLVH SGKDYVAEVE ALQTYQVQSD
1301: RERNEVRDMS NRLEARELST ALCKNSSDAS YAVASKESVL QEMFFSANTT PGRLHLAKEL LKLLPDALKS FAGSKEGLTK LNSWILDSLG KNATQLLRHC
1401: VRLLLLVSTD LVAVRLSGIG RTVKEKVCVH TSRDIRAIAR QLVSMWIEVF RKEKASNGAL KMLRRLPSVE SSKTKSKDLH SGMRTSHVTN EAGVQRVRSA
1501: GSHSPHRTGK KPDKVVKLST IMATKSDGSS LRSQKQHHDP EPKTDQGMVM SEEEAAVFAA AEAARVAAVA AAQAYASAEA VISKPRELPK IPSFGDFARR
1601: DHHLDESDTR KKMTSDKHGR LECISEIDSR NGKTKNSSAE HANCPDVDSS KMTVDNCTQR SYSNEKACLI NIKDNSAESG AVESRFTRAW VDTDAVSIDG
1701: VKHPLAIERW QAQAMEADKE FYSRIHIPME EDSGSQKQAC KSSASQVAES KPASEGQSRG VEHIKQGLIA FISTLLMPLY KSKKIDREAY KTMMRKAVTK
1801: IIDACTEGEK LMTANEFLDF RRKTKIQTFV DKLVERHWHV APAPKS
0101: KPGRKPRQQA SKDEEAEGVE AADSQAEEAL NGGSGGLASD ETAKGTKKRR RRRTKAEMEE MRAAVAAENY AKAMAGDGSP RRSKAKPKAA YSDRRSRAAA
0201: RRAVGESPVG ELPIGELAAP GPPPDLERKP DEKEEAVDKE EAADDGLSLG ETLLQDMETS RIVEDGSRNS SDGASHCVEV PARADNCIAL NPCSGGEPAE
0301: KASHSAANAS ADGVSDAQTC SETLAEDINA DAGFSQDKPP APTIKRKPGR KPKEAPKKPV RRKELPSVSA DAKPVEIAES DASSKQRRRK NKFLLARSTT
0401: VQSNSSLDNK AGSTGDVKYG NIKPNAAVPT EESLDQPAAY GVRGSRAAKD SRASHNMAAS AKEIDITDVA APSNFEDMEN TSKVKRLARN TRKRKHGDMA
0501: YEGDDDWETL MHEQGLFSNP SAGFADQSVK PKDKIKALEV LENRGVAAVS AGLMAEAVSP MEKIKFKDVL KRKGGLKDYL ECRNMILSFW NKDVKHLLDL
0601: ADCGLSNAPM EDDSPRQTLI RDVYCFLDQN GYINAGIASA KATKAHETLC SEVVEVAKLN ELPKMDTVMV EGDIVAASLQ NKDHDYGALG PLTEESKENN
0701: VPDAHCDAQE LIPHLQSKEQ AFEEKNLDVS TEGGDALLPP INITSVGNTE GPSLDKPEAA VIKHPRNNCE VNHKVESGGH GKKIIIVGAG PAGLTAARHL
0801: QRQGFAVTVL EARDRIGGRV YTDRTSLSVP VDLGASIITG VEADIATERR ADPSSLICSQ LGLELTVLKS ACPLYDVVTG NKVPDELDDE LESEYNGLLD
0901: EMEQLFEQNG ESALGLSLED GLEYTLRKKR AAHAISSVGH DDQLISMNSR GGADISKNAS TEKEMAHCGE DGKIDVLSPL ERRVMNWHFA HLEYGCAAML
1001: KSVSLPYWNQ DDVYGGFGGP HCMIKGGYGA VLQSLAEGLD VQLNHVVTEV TYRSDESDAS GISGKTVKVS TSNGAEFEGD SVLITVPLGC LKAHTIKFSP
1101: SLPDWKTSSI DRLGFGVLNK IVLEFSEVFW DENVDYFGAT AEQTDLRGQC FMFWNLKKTV GAPVIIALLV GKAAIDGQGI SSDAHVSHAM VVLRKLFTDA
1201: AVPDPVASVV TNWGLDPFSR GAYSYVAVGA SGQDYDIIGR PVANCLFFAG EATCKEHPDT VGGAILSGLR EAVRIIDLVH SGKDYVAEVE ALQTYQVQSD
1301: RERNEVRDMS NRLEARELST ALCKNSSDAS YAVASKESVL QEMFFSANTT PGRLHLAKEL LKLLPDALKS FAGSKEGLTK LNSWILDSLG KNATQLLRHC
1401: VRLLLLVSTD LVAVRLSGIG RTVKEKVCVH TSRDIRAIAR QLVSMWIEVF RKEKASNGAL KMLRRLPSVE SSKTKSKDLH SGMRTSHVTN EAGVQRVRSA
1501: GSHSPHRTGK KPDKVVKLST IMATKSDGSS LRSQKQHHDP EPKTDQGMVM SEEEAAVFAA AEAARVAAVA AAQAYASAEA VISKPRELPK IPSFGDFARR
1601: DHHLDESDTR KKMTSDKHGR LECISEIDSR NGKTKNSSAE HANCPDVDSS KMTVDNCTQR SYSNEKACLI NIKDNSAESG AVESRFTRAW VDTDAVSIDG
1701: VKHPLAIERW QAQAMEADKE FYSRIHIPME EDSGSQKQAC KSSASQVAES KPASEGQSRG VEHIKQGLIA FISTLLMPLY KSKKIDREAY KTMMRKAVTK
1801: IIDACTEGEK LMTANEFLDF RRKTKIQTFV DKLVERHWHV APAPKS
0001: MDGKEKKSGS KRGSKVFQFD DDADDDEPIG SLLEIMKHKS SKKDKVETES TGKQRQKQVV EKKLSALGKD SEDMDDTLAS FRKRLKGNKK GVESGTSRVR
0101: NHEGVDTVTN SNLKPIEEAN KNEVQSVLLR ENGASNSIQK CASETGTLLH KFSGKDKAAS PSHEKVETVS SEKEADVFHQ ITKEESEIPM SEKAVELSRV
0201: SVPMPDVHGE VNCTIAPDKH IHLGEPTSES GYYREKNLVM CDCGTQFNFE DRSFESNTQV TLCQKCKYSS HHNASNGGGI QVNTLEDGTA QASPVSIIPC
0301: EDENFRGDAI SLPNSGKPST LQRPERIAKK RKLGNMVYEG DVKWENEQGF LDCQSDKSFK GSDKCGFVPS ISKEIEIGRA AAVTAGLKAQ SVSPIEKIIL
0401: KEVLKRKGSN QEYLVCRNSI LGLWSKNVSR ILPVTECGVT GGPSESELPS ASLIREVYKF LDQRGYINAG ISSVNGKAAS STNQDYDLLQ GRQLEESSMA
0501: SVADSEEGVA FILGQVKAVE STSEGKKCAL QNDERDLVGC ATSEMLESIS KKCEASIIDD NKRSVSMNAL QDSTASNVEK HPETFSVAKP ALSSTLSSAH
0601: SNQMRGRDCV PCEVIDEKKV IVIGAGPAGL TAARHLQRQG FSVTVLEARS RVGGRVFTDR SSLSVPVDLG ASIITGIEAD VPSERMPDPS VLVCNQLGLE
0701: LSVLHGFCPL YDTVTGKKVP AELDDALQAE FNSLIDDVDL LVEEIGKERA NKMSLEDGLE YGLQRLRMPH DKVNIDKFGL LNSSSKTGIR GPFMQDESWK
0801: DDFLNPLERR VMNWHFAHTE YGCAAVLKEV SLPHWNQDEF YGGFGGPHAM IKGGYSRVVE SLAEGLDIHL NKIVSDVSYV SDVSAMDNSK HKVRVSTSNG
0901: CEYLGDAVLV TVPLGCLKAE TIKFSPPLPD WKYASIKQLG FGVLNKVVLE FPTVFWDDSV DYFGATAEET DLRGECFMFW NVKKTVGAPV LIALVVGKAA
1001: FEYTNKSKSE HVNHAMMVLR KLFGGDLVPD PVASVVTDWG TDPYSYGAYS YVAIGASGED YDVLGRPVQN CLFFAGEATC KEHPDTVGGA MMTGVREAVR
1101: IIDILRSGND YTAEIETLEK AQRKSVPVRD EVRDLIKRLE VVELSNVLAR QSLLRNMFFS AKTTVGRLHL AKELLNLPGE TLKSFAGTKE GLAVLNSWIL
1201: DSMGKNGTQL LRHCVHILVR VTSDLFALRL SGIGKTVKEK VCAHTSRDIR AIASQLVNVW LDLYRKEKAN SGKKSLRQAN TTNTSRIRRK LNSPDTDSKG
1301: KLSNGNDVKT DEEFEDNQLP MSEEEKAVFA EAEAARAAAE AAAKAFSEAY HNTSLQLPKI PSFHKFARRE QYAKMDESDF RKKFPGNVLG RQDCMSEIDS
1401: RNCKVRDWYD FPASCLDLDS ARIPVDNYSQ PSHSNELVSH SKFRECSGES VAADTSFLTG AWVDTGGSSD GFKDSQAIDR WQSQAAAADP EFFNRTLHIK
1501: DEEDSIACST GPPSWKHDQR ANECSVSQVT VNKEPHKNHI RSADRLKQGV VDFVASLLMA PYRAKKIDRD VYKSIMKKTA TKVMQHTTDV EKAMAVTQFL
1601: DSKRKNKIRD FVDKQVDKYM VIPQVPKP
0101: NHEGVDTVTN SNLKPIEEAN KNEVQSVLLR ENGASNSIQK CASETGTLLH KFSGKDKAAS PSHEKVETVS SEKEADVFHQ ITKEESEIPM SEKAVELSRV
0201: SVPMPDVHGE VNCTIAPDKH IHLGEPTSES GYYREKNLVM CDCGTQFNFE DRSFESNTQV TLCQKCKYSS HHNASNGGGI QVNTLEDGTA QASPVSIIPC
0301: EDENFRGDAI SLPNSGKPST LQRPERIAKK RKLGNMVYEG DVKWENEQGF LDCQSDKSFK GSDKCGFVPS ISKEIEIGRA AAVTAGLKAQ SVSPIEKIIL
0401: KEVLKRKGSN QEYLVCRNSI LGLWSKNVSR ILPVTECGVT GGPSESELPS ASLIREVYKF LDQRGYINAG ISSVNGKAAS STNQDYDLLQ GRQLEESSMA
0501: SVADSEEGVA FILGQVKAVE STSEGKKCAL QNDERDLVGC ATSEMLESIS KKCEASIIDD NKRSVSMNAL QDSTASNVEK HPETFSVAKP ALSSTLSSAH
0601: SNQMRGRDCV PCEVIDEKKV IVIGAGPAGL TAARHLQRQG FSVTVLEARS RVGGRVFTDR SSLSVPVDLG ASIITGIEAD VPSERMPDPS VLVCNQLGLE
0701: LSVLHGFCPL YDTVTGKKVP AELDDALQAE FNSLIDDVDL LVEEIGKERA NKMSLEDGLE YGLQRLRMPH DKVNIDKFGL LNSSSKTGIR GPFMQDESWK
0801: DDFLNPLERR VMNWHFAHTE YGCAAVLKEV SLPHWNQDEF YGGFGGPHAM IKGGYSRVVE SLAEGLDIHL NKIVSDVSYV SDVSAMDNSK HKVRVSTSNG
0901: CEYLGDAVLV TVPLGCLKAE TIKFSPPLPD WKYASIKQLG FGVLNKVVLE FPTVFWDDSV DYFGATAEET DLRGECFMFW NVKKTVGAPV LIALVVGKAA
1001: FEYTNKSKSE HVNHAMMVLR KLFGGDLVPD PVASVVTDWG TDPYSYGAYS YVAIGASGED YDVLGRPVQN CLFFAGEATC KEHPDTVGGA MMTGVREAVR
1101: IIDILRSGND YTAEIETLEK AQRKSVPVRD EVRDLIKRLE VVELSNVLAR QSLLRNMFFS AKTTVGRLHL AKELLNLPGE TLKSFAGTKE GLAVLNSWIL
1201: DSMGKNGTQL LRHCVHILVR VTSDLFALRL SGIGKTVKEK VCAHTSRDIR AIASQLVNVW LDLYRKEKAN SGKKSLRQAN TTNTSRIRRK LNSPDTDSKG
1301: KLSNGNDVKT DEEFEDNQLP MSEEEKAVFA EAEAARAAAE AAAKAFSEAY HNTSLQLPKI PSFHKFARRE QYAKMDESDF RKKFPGNVLG RQDCMSEIDS
1401: RNCKVRDWYD FPASCLDLDS ARIPVDNYSQ PSHSNELVSH SKFRECSGES VAADTSFLTG AWVDTGGSSD GFKDSQAIDR WQSQAAAADP EFFNRTLHIK
1501: DEEDSIACST GPPSWKHDQR ANECSVSQVT VNKEPHKNHI RSADRLKQGV VDFVASLLMA PYRAKKIDRD VYKSIMKKTA TKVMQHTTDV EKAMAVTQFL
1601: DSKRKNKIRD FVDKQVDKYM VIPQVPKP
Arabidopsis Description
LDL3Lysine-specific histone demethylase 1 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JLS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.