Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G083300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 90.39 | 91.59 |
| HORVU6Hr1G014420.2 | Barley | nucleus | 78.6 | 81.08 |
| Os02t0125400-01 | Rice | mitochondrion | 65.07 | 58.89 |
| Zm00001d015092_P001 | Maize | nucleus | 56.33 | 53.75 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 42.79 | 47.12 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 41.92 | 43.84 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 44.1 | 41.06 |
| OQU84271 | Sorghum | plastid | 57.64 | 33.93 |
| TraesCS2B01G432000.1 | Wheat | cytosol | 34.06 | 33.62 |
| TraesCS1B01G260000.1 | Wheat | nucleus | 34.06 | 32.64 |
| TraesCS2B01G503500.1 | Wheat | cytosol | 32.31 | 30.33 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G113800.1 | EnsemblPlantsGene:TraesCS6B01G113800 | Gene3D:1.10.472.10 | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0019901 | InterPro:Cyclin-like_sf | InterPro:Cyclin_PHO80-like | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF68 |
| PFAM:PF08613 | SEG:seg | SUPFAM:SSF47954 | MapMan:13.1.1.1.7 | : | : |
Description
No Description!
Coordinates
chr6B:-:96346115..96348499
Molecular Weight (calculated)
24469.2 Da
IEP (calculated)
4.749
GRAVY (calculated)
0.049
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMERRASSS SKRASGAPPK VVAVLAGLLE RAAKRGDAVE CGFGSAAFRG PTEKKPEIGV RRYAERIYRY AGCSPACFVV AYAYLDRLAA PPQDDAGGEE
101: VAVDSYSVHR LLITSVMVAA KFMDDIHYNN AYFARVGGVE VREMNGLELE FLFALRFRLN VTPDDFASYC AALEGEMMAT TTPPPLSPPA VMVSVSVSPE
201: EEEEAAVAGG GIITAFAAAA RVSVAEITQ
101: VAVDSYSVHR LLITSVMVAA KFMDDIHYNN AYFARVGGVE VREMNGLELE FLFALRFRLN VTPDDFASYC AALEGEMMAT TTPPPLSPPA VMVSVSVSPE
201: EEEEAAVAGG GIITAFAAAA RVSVAEITQ
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.