Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G113800.1 | Wheat | nucleus | 91.59 | 90.39 |
| HORVU6Hr1G014420.2 | Barley | nucleus | 79.2 | 80.63 |
| Os02t0125400-01 | Rice | mitochondrion | 65.49 | 58.5 |
| Zm00001d015092_P001 | Maize | nucleus | 55.31 | 52.08 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 42.92 | 45.75 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 46.02 | 42.8 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 41.59 | 37.45 |
| TraesCS2A01G413300.1 | Wheat | cytosol | 34.51 | 33.77 |
| TraesCS1A01G249300.1 | Wheat | nucleus | 35.4 | 33.47 |
| OQU84271 | Sorghum | plastid | 55.31 | 32.13 |
| TraesCS2A01G479100.1 | Wheat | cytosol | 32.74 | 30.33 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G083300.1 | EnsemblPlantsGene:TraesCS6A01G083300 | Gene3D:1.10.472.10 | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0019901 | InterPro:Cyclin-like_sf | InterPro:Cyclin_PHO80-like | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF68 |
| PFAM:PF08613 | SEG:seg | SUPFAM:SSF47954 | MapMan:13.1.1.1.7 | : | : |
Description
No Description!
Coordinates
chr6A:+:51990446..51993082
Molecular Weight (calculated)
24151.6 Da
IEP (calculated)
4.660
GRAVY (calculated)
-0.035
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: METGRRASSS KRAESGAPPK VVAVLAGLLE RAAKRGDAVE CGSGSAAFRG PTEKKPEIGV RRYAERIYRY AGCSPACFVV AYAYLDRLAA PPQDDDAGEA
101: VAVDSYSVHR LLITSVMVAA KFMDDIHYNN AYFARVGGVE LREMNGLELE FLFALRFRLN VTPDDFTSYC AALEGEMMTT TTPPAVMASV SVSPEEEEED
201: TAAVTAGGTI TAFAAAARVS VAEITQ
101: VAVDSYSVHR LLITSVMVAA KFMDDIHYNN AYFARVGGVE LREMNGLELE FLFALRFRLN VTPDDFTSYC AALEGEMMTT TTPPAVMASV SVSPEEEEED
201: TAAVTAGGTI TAFAAAARVS VAEITQ
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.