Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G410000.1 | Wheat | nucleus | 83.27 | 95.43 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 82.87 | 94.12 |
| Os04t0544200-01 | Rice | nucleus | 66.93 | 79.25 |
| EES12591 | Sorghum | cytosol | 61.75 | 71.1 |
| Zm00001d002788_P001 | Maize | cytosol | 58.57 | 71.01 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 58.17 | 68.87 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 47.81 | 58.25 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 49.4 | 51.03 |
| KRH71916 | Soybean | cytosol | 19.52 | 49.0 |
| KRH40216 | Soybean | nucleus | 35.86 | 47.87 |
| KRH48888 | Soybean | nucleus | 37.85 | 47.03 |
| CDX95612 | Canola | cytosol | 37.05 | 46.97 |
| KRH01000 | Soybean | nucleus | 37.85 | 46.34 |
| Bra000361.1-P | Field mustard | cytosol | 36.65 | 46.23 |
| Solyc01g089850.2.1 | Tomato | nucleus | 37.85 | 46.12 |
| CDX83419 | Canola | cytosol | 36.65 | 46.0 |
| CDY48257 | Canola | cytosol | 36.26 | 45.73 |
| AT2G44740.1 | Thale cress | cytosol | 36.65 | 45.54 |
| KRH66451 | Soybean | cytosol | 37.85 | 45.45 |
| PGSC0003DMT400080410 | Potato | nucleus | 36.65 | 45.32 |
| CDY30482 | Canola | cytosol | 36.26 | 45.27 |
| CDY23452 | Canola | cytosol | 36.26 | 45.27 |
| Bra037638.1-P | Field mustard | cytosol | 36.26 | 45.27 |
| PGSC0003DMT400080046 | Potato | nucleus | 37.45 | 45.19 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 36.65 | 45.1 |
| Solyc03g093790.2.1 | Tomato | nucleus | 35.06 | 44.9 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 33.47 | 43.3 |
| CDY02124 | Canola | nucleus | 19.12 | 42.48 |
| Bra012933.1-P | Field mustard | nucleus | 19.12 | 42.48 |
| CDY08862 | Canola | cytosol | 35.46 | 42.18 |
| Bra009262.1-P | Field mustard | nucleus | 35.86 | 41.67 |
| CDY65234 | Canola | nucleus | 35.86 | 41.67 |
| AT5G07450.1 | Thale cress | nucleus | 35.86 | 41.67 |
| TraesCS6A01G083300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 37.45 | 41.59 |
| AT5G61650.1 | Thale cress | nucleus | 36.26 | 41.55 |
| CDX70040 | Canola | nucleus | 35.06 | 40.74 |
| Bra004863.1-P | Field mustard | nucleus | 35.86 | 40.54 |
| CDX74684 | Canola | cytosol | 35.46 | 39.38 |
| CDY02123 | Canola | mitochondrion | 14.34 | 33.03 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 19.12 | 31.79 |
| TraesCS2A01G413300.1 | Wheat | cytosol | 27.09 | 29.44 |
| TraesCS1A01G249300.1 | Wheat | nucleus | 27.09 | 28.45 |
| TraesCS2A01G479100.1 | Wheat | cytosol | 25.1 | 25.82 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G391500.1 | EnsemblPlantsGene:TraesCS2A01G391500 | Gene3D:1.10.472.10 | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0019901 | InterPro:Cyclin-like_sf | InterPro:Cyclin_PHO80-like | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF33 |
| PFAM:PF08613 | SEG:seg | SUPFAM:SSF47954 | TMHMM:TMhelix | MapMan:13.1.1.1.7 | : |
Description
No Description!
Coordinates
chr2A:-:641794622..641796839
Molecular Weight (calculated)
27377.6 Da
IEP (calculated)
5.599
GRAVY (calculated)
-0.091
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSSRENSRV HTHTHTGAQH PREPAIEIRE ASMGSAEEED LPATDMPRVV GVLSALLERV TERNDTAAGP GALEPASRSA FRAMTKPGIS VRAYMARIAR
101: FAGCSPACFV VGYIYLDRLL RRRRALAVDS YSVHRLLITT VLSAVKFMDD ICYNNAYFAK VGGISLPEMN YLEVDFLFGV GFELNVWPET FGHYCAILQS
201: EMLCLELEPE PLLPPNAAAP GSAMHCCLSE DDGTSATTSS SSSTQQQQLA A
101: FAGCSPACFV VGYIYLDRLL RRRRALAVDS YSVHRLLITT VLSAVKFMDD ICYNNAYFAK VGGISLPEMN YLEVDFLFGV GFELNVWPET FGHYCAILQS
201: EMLCLELEPE PLLPPNAAAP GSAMHCCLSE DDGTSATTSS SSSTQQQQLA A
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.