Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G282600.1 | Wheat | cytosol | 95.75 | 97.6 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 94.34 | 96.15 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 92.45 | 93.33 |
| OQU85741 | Sorghum | extracellular | 57.08 | 82.31 |
| Zm00001d017441_P001 | Maize | cytosol | 80.19 | 81.34 |
| Os02t0652000-01 | Rice | cytosol | 75.94 | 75.94 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 68.87 | 58.17 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 53.77 | 55.34 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 58.02 | 50.62 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 47.17 | 49.02 |
| KRH71916 | Soybean | cytosol | 23.11 | 49.0 |
| KRH40216 | Soybean | nucleus | 43.4 | 48.94 |
| KRH48888 | Soybean | nucleus | 45.75 | 48.02 |
| Solyc01g089850.2.1 | Tomato | nucleus | 46.23 | 47.57 |
| KRH01000 | Soybean | nucleus | 45.75 | 47.32 |
| PGSC0003DMT400080410 | Potato | nucleus | 45.28 | 47.29 |
| Solyc03g093790.2.1 | Tomato | nucleus | 43.4 | 46.94 |
| PGSC0003DMT400080046 | Potato | nucleus | 45.75 | 46.63 |
| KRH66451 | Soybean | cytosol | 45.75 | 46.41 |
| CDX83419 | Canola | cytosol | 43.4 | 46.0 |
| CDX95612 | Canola | cytosol | 42.92 | 45.96 |
| Bra037638.1-P | Field mustard | cytosol | 43.4 | 45.77 |
| CDY23452 | Canola | cytosol | 43.4 | 45.77 |
| CDY30482 | Canola | cytosol | 43.4 | 45.77 |
| CDY48257 | Canola | cytosol | 42.92 | 45.73 |
| Bra000361.1-P | Field mustard | cytosol | 42.45 | 45.23 |
| AT2G44740.1 | Thale cress | cytosol | 42.92 | 45.05 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 40.09 | 43.81 |
| TraesCS6A01G083300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 45.75 | 42.92 |
| CDY65234 | Canola | nucleus | 43.4 | 42.59 |
| Bra009262.1-P | Field mustard | nucleus | 43.4 | 42.59 |
| CDY02124 | Canola | nucleus | 22.64 | 42.48 |
| Bra012933.1-P | Field mustard | nucleus | 22.64 | 42.48 |
| AT5G07450.1 | Thale cress | nucleus | 42.92 | 42.13 |
| CDX70040 | Canola | nucleus | 42.45 | 41.67 |
| AT5G61650.1 | Thale cress | nucleus | 42.45 | 41.1 |
| CDY08862 | Canola | cytosol | 40.57 | 40.76 |
| Bra004863.1-P | Field mustard | nucleus | 41.04 | 39.19 |
| CDX74684 | Canola | cytosol | 40.57 | 38.05 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 23.11 | 32.45 |
| CDY02123 | Canola | mitochondrion | 16.51 | 32.11 |
| TraesCS2A01G413300.1 | Wheat | cytosol | 34.43 | 31.6 |
| TraesCS1A01G249300.1 | Wheat | nucleus | 30.66 | 27.2 |
| TraesCS2A01G479100.1 | Wheat | cytosol | 30.66 | 26.64 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | PFAM:PF08613 | PIRSF:PIRSF027110 |
| PANTHER:PTHR15615 | PANTHER:PTHR15615:SF18 | SUPFAM:SSF47954 | EnsemblPlantsGene:TraesCS6A01G241800 | EnsemblPlants:TraesCS6A01G241800.1 | : |
Description
No Description!
Coordinates
chr6A:-:453570562..453572440
Molecular Weight (calculated)
22677.1 Da
IEP (calculated)
4.499
GRAVY (calculated)
0.303
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MPEAMAEAGE LVVSSAQQDD MLRVVAALAG ILERVAERND AVATPGEAAP ASAFRATTKP GISVRAYVAR IARFAGCSPA CYVVAYIYLD RLLQRARGFA
101: LAVDSYSVHR LLITTVLAAV KFMDDVCYNN AYFAKVGGIS LVEMNYLEVD FLFGVGFDLN VTPETFGHYC AVLQSEMLCA EAASAPPRLQ HCCLSESEDD
201: AASCGSQQQL AA
101: LAVDSYSVHR LLITTVLAAV KFMDDVCYNN AYFAKVGGIS LVEMNYLEVD FLFGVGFDLN VTPETFGHYC AVLQSEMLCA EAASAPPRLQ HCCLSESEDD
201: AASCGSQQQL AA
001: MAYQIDQKMI HDQEPMAEIM PNVITAMSSL LQRVSETNDD LSRPFREHKR ISAFNAVTKP SISIRSYMER IFKYADCSDS CYIVAYIYLD RFIQKQPLLP
101: IDSSNVHRLI ITSVLVSAKF MDDLCYNNAF YAKVGGITTE EMNLLELDFL FGIGFQLNVT ISTYNDYCSS LQREMVMRTM YSPLLEPAFL VRSFHKNLLK
201: NLYDEDHRNS QVTSAV
101: IDSSNVHRLI ITSVLVSAKF MDDLCYNNAF YAKVGGITTE EMNLLELDFL FGIGFQLNVT ISTYNDYCSS LQREMVMRTM YSPLLEPAFL VRSFHKNLLK
201: NLYDEDHRNS QVTSAV
Arabidopsis Description
CYCU4-2Cyclin-U4-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY16]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.