Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0123100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G44740.1 | Os02t0123100-01 | AT3G48750.1 | 15197472 |
| AT5G07450.1 | Os02t0123100-01 | AT3G48750.1 | 15197472 |
| AT5G61650.1 | Os02t0123100-01 | AT3G48750.1 | 15197472 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85741 | Sorghum | extracellular | 57.08 | 82.31 |
| Zm00001d017441_P001 | Maize | cytosol | 77.83 | 78.95 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 75.94 | 77.4 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 75.94 | 77.4 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 75.94 | 75.94 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 74.53 | 75.24 |
| Os04t0544200-01 | Rice | nucleus | 71.7 | 71.7 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 56.6 | 58.25 |
| Os10t0563900-01 | Rice | nucleus | 58.02 | 58.02 |
| KRH40216 | Soybean | nucleus | 42.92 | 48.4 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 45.28 | 47.06 |
| KRH48888 | Soybean | nucleus | 44.81 | 47.03 |
| KRH71916 | Soybean | cytosol | 22.17 | 47.0 |
| Solyc03g093790.2.1 | Tomato | nucleus | 43.4 | 46.94 |
| KRH01000 | Soybean | nucleus | 44.81 | 46.34 |
| PGSC0003DMT400080410 | Potato | nucleus | 44.34 | 46.31 |
| Solyc01g089850.2.1 | Tomato | nucleus | 44.81 | 46.12 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 33.49 | 45.81 |
| PGSC0003DMT400080046 | Potato | nucleus | 44.81 | 45.67 |
| CDX95612 | Canola | cytosol | 42.45 | 45.45 |
| CDY48257 | Canola | cytosol | 41.98 | 44.72 |
| Bra000361.1-P | Field mustard | cytosol | 41.98 | 44.72 |
| AT2G44740.1 | Thale cress | cytosol | 42.45 | 44.55 |
| CDX83419 | Canola | cytosol | 41.98 | 44.5 |
| KRH66451 | Soybean | cytosol | 43.87 | 44.5 |
| CDY30482 | Canola | cytosol | 41.98 | 44.28 |
| CDY23452 | Canola | cytosol | 41.98 | 44.28 |
| Bra037638.1-P | Field mustard | cytosol | 41.98 | 44.28 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 39.62 | 43.3 |
| AT5G07450.1 | Thale cress | nucleus | 42.45 | 41.67 |
| Bra009262.1-P | Field mustard | nucleus | 42.45 | 41.67 |
| CDY65234 | Canola | nucleus | 42.45 | 41.67 |
| Bra012933.1-P | Field mustard | nucleus | 22.17 | 41.59 |
| CDY02124 | Canola | nucleus | 22.17 | 41.59 |
| Os02t0125400-01 | Rice | mitochondrion | 49.53 | 41.5 |
| CDX70040 | Canola | nucleus | 41.98 | 41.2 |
| AT5G61650.1 | Thale cress | nucleus | 42.45 | 41.1 |
| CDY08862 | Canola | cytosol | 40.09 | 40.28 |
| Bra004863.1-P | Field mustard | nucleus | 40.57 | 38.74 |
| CDX74684 | Canola | cytosol | 40.57 | 38.05 |
| Os04t0552300-01 | Rice | cytosol | 35.38 | 34.56 |
| CDY02123 | Canola | mitochondrion | 16.51 | 32.11 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 21.7 | 30.46 |
| Os05t0398000-01 | Rice | cytosol | 19.81 | 30.43 |
| Os04t0628900-00 | Rice | nucleus | 32.55 | 26.14 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | EntrezGene:4330172 | EMBL:AK108827 | ProteinID:BAD24970.1 | ProteinID:BAD26570.1 |
| ProteinID:BAF09511.1 | ProteinID:BAS80063.1 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:Os02g0652000 | EnsemblPlants:Os02t0652000-01 |
| PFAM:PF08613 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF18 | UniProt:Q6H3X9 | SUPFAM:SSF47954 |
| UniParc:UPI00003B42E5 | RefSeq:XP_015623851.1 | SEG:seg | : | : | : |
Description
CYCLIN-U4-4PREG-like protein. (Os02t0652000-01)
Coordinates
chr2:-:26275400..26277684
Molecular Weight (calculated)
22578.1 Da
IEP (calculated)
5.020
GRAVY (calculated)
0.303
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGAELVGE SAHQDMPRVV AALAGILERV AGRNDAAATP AELAAAPASP FRATAKPGIS VRAYAARIAR FAGCSPACYV VAYIYLDRLL RRGRRCLALA
101: LAVDSYSVHR LLITAVLSAV KFMDDICYNN AYFAKVGGIS LAEMNYLEVD FLFGVGFDLN VTPETFADYC AVLQSEMLCA APPTRLHYCC LSEDDAGSSS
201: SSSLREAAME AS
101: LAVDSYSVHR LLITAVLSAV KFMDDICYNN AYFAKVGGIS LAEMNYLEVD FLFGVGFDLN VTPETFADYC AVLQSEMLCA APPTRLHYCC LSEDDAGSSS
201: SSSLREAAME AS
001: MAYQIDQKMI HDQEPMAEIM PNVITAMSSL LQRVSETNDD LSRPFREHKR ISAFNAVTKP SISIRSYMER IFKYADCSDS CYIVAYIYLD RFIQKQPLLP
101: IDSSNVHRLI ITSVLVSAKF MDDLCYNNAF YAKVGGITTE EMNLLELDFL FGIGFQLNVT ISTYNDYCSS LQREMVMRTM YSPLLEPAFL VRSFHKNLLK
201: NLYDEDHRNS QVTSAV
101: IDSSNVHRLI ITSVLVSAKF MDDLCYNNAF YAKVGGITTE EMNLLELDFL FGIGFQLNVT ISTYNDYCSS LQREMVMRTM YSPLLEPAFL VRSFHKNLLK
201: NLYDEDHRNS QVTSAV
Arabidopsis Description
CYCU4-2Cyclin-U4-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY16]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.