Factsheet for Solyc01g089850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080046	Potato	nucleus	99.03	98.08
KRH01000	Soybean	nucleus	75.73	76.1
KRH40216	Soybean	nucleus	69.42	76.06
Solyc03g093790.2.1	Tomato	nucleus	61.16	64.29
OQU85741	Sorghum	extracellular	37.86	53.06
GSMUA_Achr2P10440_001	Banana	cytosol	50.49	52.79
Os10t0563900-01	Rice	nucleus	50.97	49.53
TraesCS6B01G282600.1	Wheat	cytosol	48.06	47.6
HORVU6Hr1G061870.1	Barley	cytosol	47.57	46.67
TraesCS6D01G223800.1	Wheat	cytosol	47.09	46.63
GSMUA_Achr5P12540_001	Banana	cytosol, nucleus, plastid	46.6	46.6
Zm00001d029970_P001	Maize	nucleus	50.97	46.46
TraesCS6A01G241800.1	Wheat	nucleus	47.57	46.23
Zm00001d017441_P001	Maize	cytosol	46.12	45.45
GSMUA_Achr1P00510_001	Banana	nucleus	45.15	45.37
Os02t0652000-01	Rice	cytosol	46.12	44.81
Zm00001d002788_P001	Maize	cytosol	44.17	43.96
TraesCS2B01G410000.1	Wheat	nucleus	46.6	43.84
EER94473	Sorghum	nucleus	50.49	43.7
EES12591	Sorghum	cytosol	46.12	43.58
Os04t0544200-01	Rice	nucleus	44.66	43.4
TraesCS1D01G218800.1	Wheat	nucleus	50.49	43.15
TraesCS2D01G389800.1	Wheat	nucleus	46.12	42.99
TraesCS1A01G217000.1	Wheat	cytosol	50.0	42.39
TraesCS1B01G230100.1	Wheat	nucleus	50.49	42.28
TraesCS2A01G391500.1	Wheat	nucleus	46.12	37.85
HORVU2Hr1G093210.7	Barley	nucleus	26.7	35.48
Solyc01g098930.2.1	Tomato	cytosol	38.84	35.4
Solyc07g052610.2.1	Tomato	cytosol	39.81	34.02
Solyc09g065200.2.1	Tomato	nucleus	38.35	33.33
HORVU1Hr1G055470.2	Barley	plastid	50.97	33.02
Solyc01g090800.2.1	Tomato	cytosol	34.95	32.73

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	UniProt:K4AYS6	PFAM:PF08613
PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF28	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc01g089850.2	EnsemblPlants:Solyc01g089850.2.1
UniParc:UPI0002761B59	:	:	:	:	:

Description

Cyclin-U4-1 [Source:Projected from Arabidopsis thaliana (AT2G44740) UniProtKB/Swiss-Prot;Acc:O80513]

Coordinates

chr1:-:83576960..83579387

Molecular Weight (calculated)

23780.7 Da

IEP (calculated)

5.198

GRAVY (calculated)

-0.021

Length

206 amino acids

Sequence
(BLAST)

001: MAELEIQNQN LMPKLIDYLS SLLQRVAEAN DINGRFQPQK ISVFHGLTRP NISIQSYLER IFKYANCSPC CFVVAYVYLD RFTQCQPSLP INSFNIHRLL
101: ITSVMIAAKF MDDMYYNNAY YAKVGGISIT EMNFLEVDFL FGLGFHLNVT PTTFQTYCAY LQKEMLMQSP PMNFEDSSLF IGRSPKLQYI CFNEDESSSQ
201: QQQLVV

Best Arabidopsis Sequence Match ( AT2G44740.1 )
(BLAST)

001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV

Arabidopsis Description

CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.