Factsheet for Solyc09g065200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033559	Potato	nucleus	87.34	95.39
VIT_07s0104g00540.t01	Wine grape	nucleus	65.4	68.58
KRH67205	Soybean	nucleus	62.03	67.74
KRG95527	Soybean	nucleus	63.71	61.38
Os05t0398000-01	Rice	cytosol	31.65	54.35
AT3G63120.2	Thale cress	cytosol	46.41	49.77
Solyc01g098930.2.1	Tomato	cytosol	46.84	49.12
GSMUA_AchrUn_...	Banana	nucleus	49.37	48.95
Bra007729.1-P	Field mustard	cytosol	45.15	48.2
CDY56463	Canola	cytosol	45.15	48.2
CDX76682	Canola	cytosol	44.73	47.96
TraesCS1D01G248800.1	Wheat	nucleus	45.15	45.73
EES19489	Sorghum	cytosol	45.57	45.57
Zm00001d038133_P002	Maize	nucleus	44.73	44.92
TraesCS1A01G249300.1	Wheat	nucleus	45.15	44.77
TraesCS1B01G260000.1	Wheat	nucleus	45.15	44.77
Solyc03g093790.2.1	Tomato	nucleus	33.76	40.82
Solyc01g089850.2.1	Tomato	nucleus	33.33	38.35
Solyc07g052610.2.1	Tomato	cytosol	36.71	36.1
HORVU1Hr1G062210.1	Barley	nucleus, plastid	45.99	35.86
Solyc01g090800.2.1	Tomato	cytosol	32.91	35.45

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	UniProt:K4CUE7	PFAM:PF08613
PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF40	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc09g065200.2	EnsemblPlants:Solyc09g065200.2.1
UniParc:UPI000276C516	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:63177435..63180374

Molecular Weight (calculated)

26702.2 Da

IEP (calculated)

7.672

GRAVY (calculated)

-0.051

Length

237 amino acids

Sequence
(BLAST)

001: MITISNRKVF YSDICYKLLD MGTLAPEPEV TCSKQYLALG LKISGKEKSG KPRVLSLLST LLERSVQNNE SLLESSQSED VITIFHGSRA PSLNIEQYLD
101: RIYKYSCCSP SCFVVAHIYM ERFIECTSAH LTSLNVHRLL ITSVMVAAKF IDDAFYNNAY YARVGGVTTK ELNKLEMKFL FGLDFQLHVN VPTFGSYCSL
201: IEKEGTVGLQ IERSIQACRI SESWSNKDDS KCAQIAR

Best Arabidopsis Sequence Match ( AT3G63120.2 )
(BLAST)

001: MDSLATDPAF IDSDVYLRLG LIIEGKRLKK PPTVLSRLSS SLERSLLLNH DDKILLGSPD SVTVFDGRSP PEISIAHYLD RIFKYSCCSP SCFVIAHIYI
101: DHFLHKTRAL LKPLNVHRLI ITTVMLAAKV FDDRYFNNAY YARVGGVTTR ELNRLEMELL FTLDFKLQVD PQTFHTHCCQ LEKQNRDGFQ IEWPIKEACR
201: ANKETWQKRT PDSLCSQTTA R

Arabidopsis Description

CYCU3-1Cyclin-U3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB60]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.