Factsheet for Solyc07g052610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g066330.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21870.1	Solyc08g066330.1.1	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067297	Potato	cytosol, nucleus	87.14	93.33
VIT_12s0059g02480.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	59.34	69.76
KRH22528	Soybean	nucleus	62.66	65.09
KRH26828	Soybean	cytosol	62.24	64.66
CDY55656	Canola	cytosol	25.73	64.58
CDY64256	Canola	cytosol	23.24	63.64
CDY38647	Canola	cytosol	55.19	63.33
CDY54190	Canola	cytosol	55.19	63.33
Bra031315.1-P	Field mustard	cytosol	54.36	62.38
AT3G21870.1	Thale cress	cytosol	53.94	61.9
GSMUA_Achr11P...	Banana	mitochondrion	36.93	51.45
Solyc01g089850.2.1	Tomato	nucleus	34.02	39.81
Solyc03g093790.2.1	Tomato	nucleus	31.95	39.29
Solyc09g065200.2.1	Tomato	nucleus	36.1	36.71
TraesCS2A01G479100.1	Wheat	cytosol	35.27	34.84
TraesCS2B01G503500.1	Wheat	cytosol	35.27	34.84
Solyc01g098930.2.1	Tomato	cytosol	31.95	34.07
TraesCS2D01G478400.1	Wheat	cytosol	34.44	34.02
HORVU2Hr1G107830.1	Barley	cytosol	34.85	34.01
OQU82384	Sorghum	nucleus	29.88	33.8
Solyc01g090800.2.1	Tomato	cytosol	30.29	33.18
Os04t0628900-00	Rice	nucleus	34.02	31.06
Zm00001d026360_P001	Maize	cytosol	34.85	29.79

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	UniProt:K4CFG0	PFAM:PF08613
PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF0	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc07g052610.2	EnsemblPlants:Solyc07g052610.2.1
UniParc:UPI000276B835	SEG:seg	:	:	:	:

Description

Cyclin-U1-1 [Source:Projected from Arabidopsis thaliana (AT3G21870) UniProtKB/Swiss-Prot;Acc:Q9LJ45]

Coordinates

chr7:-:61077121..61078641

Molecular Weight (calculated)

26869.1 Da

IEP (calculated)

5.838

GRAVY (calculated)

-0.163

Length

241 amino acids

Sequence
(BLAST)

001: MLHEGGSDEF HRRPDPSADD VATPRVLTIL SYVLEKLVAR NDQLLLLGRQ VGHDNELMSN GAGGPRRVLG KNFNAFHGVR APNISIPKYL ERLYKYTNCS
101: PSCFVVGYVY IDRLGHKYPD SLLVSLNVHR LLVTSVMVAS KMLDDAHYNN AFYARVGGVS NAELNKLELE LLFLLDFGVN MSARVFESYC QYLEREMLSN
201: GPTLKIEKSA INSITTSTVD DATEISVEDI DHTSSPSQLL D

Best Arabidopsis Sequence Match ( AT3G21870.1 )
(BLAST)

001: MLTAAGDDEL DPVVGPESAT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPACFVVG YVYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV

Arabidopsis Description

CYCU1-1Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.