Factsheet for Bra031315.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018036.1-P
Bra029917.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21870.1	Bra018036.1-P	AT3G48750.1	15197472
AT3G21870.1	Bra029917.1-P	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38647	Canola	cytosol	99.05	99.05
CDY54190	Canola	cytosol	98.57	98.57
AT3G21870.1	Thale cress	cytosol	87.14	87.14
CDY64256	Canola	cytosol	31.9	76.14
CDY55656	Canola	cytosol	32.38	70.83
VIT_12s0059g02480.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	60.95	62.44
PGSC0003DMT400067297	Potato	cytosol, nucleus	61.43	57.33
KRH22528	Soybean	nucleus	61.43	55.6
KRH26828	Soybean	cytosol	60.48	54.74
Solyc07g052610.2.1	Tomato	cytosol	62.38	54.36
GSMUA_Achr11P...	Banana	mitochondrion	42.38	51.45
Bra012933.1-P	Field mustard	nucleus	20.95	38.94
Bra000361.1-P	Field mustard	cytosol	36.67	38.69
Bra037638.1-P	Field mustard	cytosol	35.24	36.82
Bra004863.1-P	Field mustard	nucleus	36.19	34.23
Bra000369.1-P	Field mustard	plastid	36.19	33.93
OQU82384	Sorghum	nucleus	33.33	32.86
TraesCS2A01G479100.1	Wheat	cytosol	38.1	32.79
TraesCS2B01G503500.1	Wheat	cytosol	38.1	32.79
TraesCS2D01G478400.1	Wheat	cytosol	38.1	32.79
Bra004888.1-P	Field mustard	mitochondrion, plastid	34.29	32.43
HORVU2Hr1G107830.1	Barley	cytosol	38.1	32.39
Bra003420.1-P	Field mustard	cytosol	33.81	32.27
Bra007729.1-P	Field mustard	cytosol	32.86	31.08
Bra007544.1-P	Field mustard	plastid	34.29	30.9
Os04t0628900-00	Rice	nucleus	38.1	30.3
Bra009262.1-P	Field mustard	nucleus	30.48	29.63
Zm00001d026360_P001	Maize	cytosol	38.1	28.37

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	EnsemblPlantsGene:Bra031315	EnsemblPlants:Bra031315.1	EnsemblPlants:Bra031315.1-P	InterPro:Cyclin-like_sf
InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0019901	UniProt:M4ER92	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF0
SUPFAM:SSF47954	UniParc:UPI000254770C	SEG:seg	:	:	:

Description

AT3G21870 (E=2e-089) CYCP2;1 | CYCP2;1 (cyclin p2;1); cyclin-dependent protein kinase

Coordinates

chrA05:+:16082580..16083457

Molecular Weight (calculated)

23313.1 Da

IEP (calculated)

5.936

GRAVY (calculated)

0.077

Length

210 amino acids

Sequence
(BLAST)

001: MLASTGDDEP DLVVGQDLPT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFD GVRAPSISIA KYLERIYKYT KCSPSCFVVG YAYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IASKMLDDVH YNNELYARVG GVSNADLNKM ELELLFLLDF RVTVSFRAFE SYCFHLEKEM LLNGDASSLQ DNGPVQETLS
201: VASSLSSLYV

Best Arabidopsis Sequence Match ( AT3G21870.1 )
(BLAST)

001: MLTAAGDDEL DPVVGPESAT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPACFVVG YVYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV

Arabidopsis Description

CYCU1-1Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.