Factsheet for PGSC0003DMT400067297

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400077428

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21870.1	PGSC0003DMT400077428	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g052610.2.1	Tomato	cytosol	93.33	87.14
VIT_12s0059g02480.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	65.33	71.71
KRH22528	Soybean	nucleus	65.33	63.36
KRH26828	Soybean	cytosol	64.89	62.93
CDY64256	Canola	cytosol	24.44	62.5
CDY54190	Canola	cytosol	58.22	62.38
CDY38647	Canola	cytosol	58.22	62.38
Bra031315.1-P	Field mustard	cytosol	57.33	61.43
CDY55656	Canola	cytosol	25.78	60.42
AT3G21870.1	Thale cress	cytosol	56.0	60.0
GSMUA_Achr11P...	Banana	mitochondrion	40.89	53.18
PGSC0003DMT400033559	Potato	nucleus	40.44	41.94
PGSC0003DMT400080046	Potato	nucleus	37.33	40.38
PGSC0003DMT400080410	Potato	nucleus	34.67	38.42
TraesCS2B01G503500.1	Wheat	cytosol	37.78	34.84
TraesCS2A01G479100.1	Wheat	cytosol	37.78	34.84
OQU82384	Sorghum	nucleus	32.44	34.27
PGSC0003DMT400008886	Potato	nucleus	34.22	34.07
TraesCS2D01G478400.1	Wheat	cytosol	36.89	34.02
HORVU2Hr1G107830.1	Barley	cytosol	37.33	34.01
PGSC0003DMT400081162	Potato	cytosol	14.67	33.0
PGSC0003DMT400066949	Potato	nucleus	32.0	32.73
Os04t0628900-00	Rice	nucleus	36.89	31.44
Zm00001d026360_P001	Maize	cytosol	38.22	30.5

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	UniProt:M1CH18	PFAM:PF08613
EnsemblPlantsGene:PGSC0003DMG400026170	PGSC:PGSC0003DMG400026170	EnsemblPlants:PGSC0003DMT400067297	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF0
SUPFAM:SSF47954	UniParc:UPI0002950A73	SEG:seg	:	:	:

Description

Nuc-1 negative regulatory protein preg [Source:PGSC_GENE;Acc:PGSC0003DMG400026170]

Coordinates

chr7:-:47275645..47277690

Molecular Weight (calculated)

24790.6 Da

IEP (calculated)

5.584

GRAVY (calculated)

-0.019

Length

225 amino acids

Sequence
(BLAST)

001: PIAADAATPR VLTILSYVLE RLVARNDQLL VLGRQVAHDN GLMSNGEGGP QSVLGKNFNA FHGVRAPNIS IPKYLERLYK YTNCSPSCFV VGYVYIDRLG
101: HKYPDSLLVS LNVHRLLVTS VMVASKMLDD AHYNNAFYAR VGGVSNAELN KLELELLFLL DFGVNVSARV FESYCQYLEK EMLSNGPTLK IEKSVISSTT
201: STVDDATEIS VEDTDHTSSP SQLLD

Best Arabidopsis Sequence Match ( AT3G21870.1 )
(BLAST)

001: MLTAAGDDEL DPVVGPESAT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPACFVVG YVYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV

Arabidopsis Description

CYCU1-1Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.