Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os02t0123100-01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G21870.1 | Os02t0123100-01 | AT3G48750.1 | 15197472 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2D01G478400.1 | Wheat | cytosol | 58.71 | 63.52 |
TraesCS2A01G479100.1 | Wheat | cytosol | 58.71 | 63.52 |
HORVU2Hr1G107830.1 | Barley | cytosol | 59.09 | 63.16 |
TraesCS2B01G503500.1 | Wheat | cytosol | 58.33 | 63.11 |
OQU82384 | Sorghum | nucleus | 45.45 | 56.34 |
Zm00001d026360_P001 | Maize | cytosol | 56.44 | 52.84 |
GSMUA_Achr11P... | Banana | mitochondrion | 30.3 | 46.24 |
CDY64256 | Canola | cytosol | 14.77 | 44.32 |
VIT_12s0059g02480.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 31.06 | 40.0 |
CDY55656 | Canola | cytosol | 14.39 | 39.58 |
CDY38647 | Canola | cytosol | 30.68 | 38.57 |
CDY54190 | Canola | cytosol | 30.68 | 38.57 |
Bra031315.1-P | Field mustard | cytosol | 30.3 | 38.1 |
AT3G21870.1 | Thale cress | cytosol | 29.92 | 37.62 |
PGSC0003DMT400067297 | Potato | cytosol, nucleus | 31.44 | 36.89 |
KRH26828 | Soybean | cytosol | 30.3 | 34.48 |
KRH22528 | Soybean | nucleus | 29.92 | 34.05 |
Solyc07g052610.2.1 | Tomato | cytosol | 31.06 | 34.02 |
Os10t0563900-01 | Rice | nucleus | 26.52 | 33.02 |
Os02t0652000-01 | Rice | cytosol | 26.14 | 32.55 |
Os02t0125400-01 | Rice | mitochondrion | 30.3 | 31.62 |
Os04t0544200-01 | Rice | nucleus | 25.38 | 31.6 |
Os04t0552300-01 | Rice | cytosol | 23.48 | 28.57 |
Os05t0398000-01 | Rice | cytosol | 12.5 | 23.91 |
Protein Annotations
Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | ProteinID:BAF15876.2 | ProteinID:BAH92831.1 | ProteinID:BAS91144.1 | ProteinID:CAE04249.3 |
InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
GO:GO:0019538 | GO:GO:0019901 | GO:GO:0051301 | EnsemblPlantsGene:Os04g0628900 | EnsemblPlants:Os04t0628900-00 | PFAM:PF08613 |
PANTHER:PTHR15615 | PANTHER:PTHR15615:SF0 | UniProt:Q0J9W0 | SUPFAM:SSF47954 | UniParc:UPI00001B1F5F | SEG:seg |
Description
CYCLIN-U1-1Cyclin-P1-1. (Os04t0628900-00)
Coordinates
chr4:+:31995412..31998252
Molecular Weight (calculated)
27782.0 Da
IEP (calculated)
7.692
GRAVY (calculated)
-0.091
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAAAAAGGE MSRQKATASA PPPPELDMVA RAVQRLVARN DAVEALSGGG EAAAGLGAGM AAFEAARGAP APRIGVAQYL ERVHRYAGLE PECYVVAYAY
101: VDMAAHRRPA AAVASRNVHR LLLACLLVAS KVLDDFHHNN AFFARVGGVS NAEMNRLELE LLAVLDFEVM LSHRVYELYR EHLEKEARRD GGGGDMLAGA
201: SAAAAAKAGR MAAVSPSKLL ERAAVNGAAQ HDDWRSLGTA AAAEAANGVR RHRSSSSSRY SFDC
101: VDMAAHRRPA AAVASRNVHR LLLACLLVAS KVLDDFHHNN AFFARVGGVS NAEMNRLELE LLAVLDFEVM LSHRVYELYR EHLEKEARRD GGGGDMLAGA
201: SAAAAAKAGR MAAVSPSKLL ERAAVNGAAQ HDDWRSLGTA AAAEAANGVR RHRSSSSSRY SFDC
001: MLTAAGDDEL DPVVGPESAT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPACFVVG YVYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV
Arabidopsis Description
CYCU1-1Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.