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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0123100-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G21870.1 Os02t0123100-01 AT3G48750.1 15197472
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G478400.1 Wheat cytosol 58.71 63.52
TraesCS2A01G479100.1 Wheat cytosol 58.71 63.52
HORVU2Hr1G107830.1 Barley cytosol 59.09 63.16
TraesCS2B01G503500.1 Wheat cytosol 58.33 63.11
OQU82384 Sorghum nucleus 45.45 56.34
Zm00001d026360_P001 Maize cytosol 56.44 52.84
GSMUA_Achr11P... Banana mitochondrion 30.3 46.24
CDY64256 Canola cytosol 14.77 44.32
VIT_12s0059g02480.t01 Wine grape endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 31.06 40.0
CDY55656 Canola cytosol 14.39 39.58
CDY38647 Canola cytosol 30.68 38.57
CDY54190 Canola cytosol 30.68 38.57
Bra031315.1-P Field mustard cytosol 30.3 38.1
AT3G21870.1 Thale cress cytosol 29.92 37.62
PGSC0003DMT400067297 Potato cytosol, nucleus 31.44 36.89
KRH26828 Soybean cytosol 30.3 34.48
KRH22528 Soybean nucleus 29.92 34.05
Solyc07g052610.2.1 Tomato cytosol 31.06 34.02
Os10t0563900-01 Rice nucleus 26.52 33.02
Os02t0652000-01 Rice cytosol 26.14 32.55
Os02t0125400-01 Rice mitochondrion 30.3 31.62
Os04t0544200-01 Rice nucleus 25.38 31.6
Os04t0552300-01 Rice cytosol 23.48 28.57
Os05t0398000-01 Rice cytosol 12.5 23.91
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.7ProteinID:BAF15876.2ProteinID:BAH92831.1ProteinID:BAS91144.1ProteinID:CAE04249.3
InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_PHO80-likeGO:GO:0000079GO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0006464GO:GO:0007049GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0019538GO:GO:0019901GO:GO:0051301EnsemblPlantsGene:Os04g0628900EnsemblPlants:Os04t0628900-00PFAM:PF08613
PANTHER:PTHR15615PANTHER:PTHR15615:SF0UniProt:Q0J9W0SUPFAM:SSF47954UniParc:UPI00001B1F5FSEG:seg
Description
CYCLIN-U1-1Cyclin-P1-1. (Os04t0628900-00)
Coordinates
chr4:+:31995412..31998252
Molecular Weight (calculated)
27782.0 Da
IEP (calculated)
7.692
GRAVY (calculated)
-0.091
Length
264 amino acids
Sequence
(BLAST)
001: MDAAAAAGGE MSRQKATASA PPPPELDMVA RAVQRLVARN DAVEALSGGG EAAAGLGAGM AAFEAARGAP APRIGVAQYL ERVHRYAGLE PECYVVAYAY
101: VDMAAHRRPA AAVASRNVHR LLLACLLVAS KVLDDFHHNN AFFARVGGVS NAEMNRLELE LLAVLDFEVM LSHRVYELYR EHLEKEARRD GGGGDMLAGA
201: SAAAAAKAGR MAAVSPSKLL ERAAVNGAAQ HDDWRSLGTA AAAEAANGVR RHRSSSSSRY SFDC
Best Arabidopsis Sequence Match ( AT3G21870.1 )
(BLAST)
001: MLTAAGDDEL DPVVGPESAT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPACFVVG YVYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV
Arabidopsis Description
CYCU1-1Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.