Factsheet for Os10t0563900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0123100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44740.1	Os02t0123100-01	AT3G48750.1	15197472
AT5G07450.1	Os02t0123100-01	AT3G48750.1	15197472
AT5G61650.1	Os02t0123100-01	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029970_P001	Maize	nucleus	81.13	76.11
EER94473	Sorghum	nucleus	82.55	73.53
TraesCS1D01G218800.1	Wheat	nucleus	75.47	66.39
TraesCS1A01G217000.1	Wheat	cytosol	75.47	65.84
TraesCS1B01G230100.1	Wheat	nucleus	75.47	65.04
KRH71916	Soybean	cytosol	29.72	63.0
GSMUA_Achr5P12540_001	Banana	cytosol, nucleus, plastid	58.96	60.68
Os04t0544200-01	Rice	nucleus	59.91	59.91
Os02t0652000-01	Rice	cytosol	58.02	58.02
KRH40216	Soybean	nucleus	48.58	54.79
VIT_16s0013g00630.t01	Wine grape	plasma membrane	49.06	53.61
KRH01000	Soybean	nucleus	50.94	52.68
CDX95612	Canola	cytosol	49.06	52.53
KRH48888	Soybean	nucleus	50.0	52.48
VIT_15s0021g01280.t01	Wine grape	nucleus	50.47	52.45
Bra037638.1-P	Field mustard	cytosol	49.53	52.24
CDY23452	Canola	cytosol	49.53	52.24
CDY30482	Canola	cytosol	49.53	52.24
AT2G44740.1	Thale cress	cytosol	49.53	51.98
CDX83419	Canola	cytosol	48.58	51.5
CDY02124	Canola	nucleus	27.36	51.33
Bra012933.1-P	Field mustard	nucleus	27.36	51.33
CDY48257	Canola	cytosol	48.11	51.26
Solyc01g089850.2.1	Tomato	nucleus	49.53	50.97
Bra000361.1-P	Field mustard	cytosol	47.64	50.75
HORVU1Hr1G055470.2	Barley	plastid	75.94	50.63
PGSC0003DMT400080046	Potato	nucleus	49.06	50.0
KRH66451	Soybean	cytosol	49.06	49.76
PGSC0003DMT400080410	Potato	nucleus	47.64	49.75
Solyc03g093790.2.1	Tomato	nucleus	45.75	49.49
CDY08862	Canola	cytosol	46.7	46.92
AT5G61650.1	Thale cress	nucleus	47.64	46.12
Bra009262.1-P	Field mustard	nucleus	45.75	44.91
Bra004863.1-P	Field mustard	nucleus	46.23	44.14
CDY65234	Canola	nucleus	44.81	43.98
CDX70040	Canola	nucleus	44.81	43.98
AT5G07450.1	Thale cress	nucleus	44.34	43.52
CDX74684	Canola	cytosol	46.23	43.36
KRH07327	Soybean	endoplasmic reticulum, extracellular	28.77	40.4
Os02t0125400-01	Rice	mitochondrion	46.23	38.74
Os04t0552300-01	Rice	cytosol	39.62	38.71
Os05t0398000-01	Rice	cytosol	21.23	32.61
CDY02123	Canola	mitochondrion	16.51	32.11
Os04t0628900-00	Rice	nucleus	33.02	26.52

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	EntrezGene:4349405	ProteinID:AAG60183.1	ProteinID:AAP55040.1	EMBL:AK107529
ProteinID:BAF27243.1	ProteinID:BAT12088.1	ncoils:Coil	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like
ProteinID:EAZ16997.1	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901
GO:GO:0051301	EnsemblPlantsGene:Os10g0563900	EnsemblPlants:Os10t0563900-01	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615
PANTHER:PTHR15615:SF28	UniProt:Q7XC35	SUPFAM:SSF47954	UniParc:UPI00000A964C	RefSeq:XP_015613286.1	SEG:seg

Description

CYCLIN-U4-3Cyclin-related 2 domain containing protein. (Os10t0563900-01)

Coordinates

chr10:+:22268600..22270503

Molecular Weight (calculated)

23367.0 Da

IEP (calculated)

5.584

GRAVY (calculated)

0.134

Length

212 amino acids

Sequence
(BLAST)

001: MRTGEVAEAV PRVVAILSSL LQRVAERNDA AAAAAAVGEE AAAVSAFQGL TKPAISIGGY LERIFRFANC SPSCYVVAYI YLDRFLRRRP ALAVDSFNVH
101: RLLITSVLTA VKFVDDICYN NAYFARVGGI SLMEMNYLEV DFLFGIAFDL NVTPAAFASY CAVLQSEMTY LEQPPAVDLP RLHCCPSDQD DAGCHHKQQQ
201: QQQQQQQHQL AV

Best Arabidopsis Sequence Match ( AT2G44740.1 )
(BLAST)

001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV

Arabidopsis Description

CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.