Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- peroxisome 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH01000 | Soybean | nucleus | 97.87 | 89.76 |
| KRH71916 | Soybean | cytosol | 46.28 | 87.0 |
| KRH48888 | Soybean | nucleus | 86.17 | 80.2 |
| KRH66451 | Soybean | cytosol | 84.04 | 75.6 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 76.6 | 70.59 |
| Solyc01g089850.2.1 | Tomato | nucleus | 76.06 | 69.42 |
| PGSC0003DMT400080046 | Potato | nucleus | 75.53 | 68.27 |
| Bra012933.1-P | Field mustard | nucleus | 37.23 | 61.95 |
| CDY02124 | Canola | nucleus | 37.23 | 61.95 |
| PGSC0003DMT400080410 | Potato | nucleus | 64.36 | 59.61 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 46.81 | 58.28 |
| Solyc03g093790.2.1 | Tomato | nucleus | 60.11 | 57.65 |
| GSMUA_Achr2P10440_001 | Banana | cytosol | 55.32 | 52.79 |
| Bra009262.1-P | Field mustard | nucleus | 58.51 | 50.93 |
| AT5G61650.1 | Thale cress | nucleus | 59.04 | 50.68 |
| CDY65234 | Canola | nucleus | 57.98 | 50.46 |
| CDY08862 | Canola | cytosol | 56.38 | 50.24 |
| CDX70040 | Canola | nucleus | 57.45 | 50.0 |
| AT5G07450.1 | Thale cress | nucleus | 56.91 | 49.54 |
| Os10t0563900-01 | Rice | nucleus | 54.79 | 48.58 |
| OQU85741 | Sorghum | extracellular | 37.23 | 47.62 |
| GSMUA_Achr1P00510_001 | Banana | nucleus | 51.06 | 46.83 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 51.06 | 46.6 |
| KRG96839 | Soybean | nucleus | 41.49 | 44.32 |
| Zm00001d029970_P001 | Maize | nucleus | 53.19 | 44.25 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 48.94 | 44.23 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 48.94 | 43.4 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 48.4 | 43.33 |
| Os02t0652000-01 | Rice | cytosol | 48.4 | 42.92 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 47.34 | 42.79 |
| Zm00001d017441_P001 | Maize | cytosol | 47.34 | 42.58 |
| EER94473 | Sorghum | nucleus | 53.72 | 42.44 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 53.72 | 41.91 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 53.19 | 41.15 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 47.87 | 41.1 |
| Zm00001d002788_P001 | Maize | cytosol | 45.21 | 41.06 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 53.72 | 41.06 |
| Os04t0544200-01 | Rice | nucleus | 46.28 | 41.04 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 47.87 | 40.72 |
| EES12591 | Sorghum | cytosol | 45.74 | 39.45 |
| KRH67205 | Soybean | nucleus | 45.21 | 39.17 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 47.87 | 35.86 |
| KRH26828 | Soybean | cytosol | 43.09 | 34.91 |
| KRH22528 | Soybean | nucleus | 43.09 | 34.91 |
| KRG95527 | Soybean | nucleus | 44.68 | 34.15 |
| CDY02123 | Canola | mitochondrion | 19.68 | 33.95 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 27.66 | 33.55 |
| KRH65411 | Soybean | cytosol, nucleus, plastid | 38.3 | 32.14 |
| HORVU1Hr1G055470.2 | Barley | plastid | 53.72 | 31.76 |
| KRH76137 | Soybean | plastid | 37.77 | 31.7 |
| KRG88936 | Soybean | nucleus | 37.23 | 31.39 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:100812468 | MapMan:13.1.1.1.7 | EMBL:ACUP02006028 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U |
| InterPro:Cyclin_PHO80-like | EnsemblPlantsGene:GLYMA_09G245400 | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0019901 | UniProt:I1L651 | EnsemblPlants:KRH40216 | ProteinID:KRH40216 | ProteinID:KRH40216.1 | PFAM:PF08613 |
| PIRSF:PIRSF027110 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF28 | SUPFAM:SSF47954 | UniParc:UPI0002338787 | : |
Description
hypothetical protein
Coordinates
chr9:+:46747417..46749382
Molecular Weight (calculated)
21388.1 Da
IEP (calculated)
8.078
GRAVY (calculated)
0.156
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELESPNVM PKLISFLSSL LKRVAESNDL NQQQLIHQKV SVFHGLTRPT ISIQSYLERI FKYANCSPSC FIVAYVYLDR FTQRQPSLPI NSFNVHRLLI
101: TSVMVAAKFM DDLYYNNAYY AKVGGITTIE MNFLEVDFLF GLGFHLNVTP GTFQAYCAHL QSEMLLMQPL NFADSFLSLG KSLNKAHL
101: TSVMVAAKFM DDLYYNNAYY AKVGGITTIE MNFLEVDFLF GLGFHLNVTP GTFQAYCAHL QSEMLLMQPL NFADSFLSLG KSLNKAHL
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.