CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67205	Soybean	nucleus	84.96	96.31
VIT_07s0104g00540.t01	Wine grape	nucleus	67.48	73.45
PGSC0003DMT400033559	Potato	nucleus	59.76	67.74
Solyc09g065200.2.1	Tomato	nucleus	61.38	63.71
KRG96839	Soybean	nucleus	39.02	54.55
GSMUA_AchrUn_...	Banana	nucleus	52.03	53.56
Os05t0398000-01	Rice	cytosol	29.67	52.9
AT3G63120.2	Thale cress	cytosol	45.94	51.13
KRH71916	Soybean	cytosol	20.33	50.0
Bra007729.1-P	Field mustard	cytosol	43.9	48.65
CDY56463	Canola	cytosol	43.9	48.65
CDX76682	Canola	cytosol	43.09	47.96
TraesCS1D01G248800.1	Wheat	nucleus	43.9	46.15
TraesCS1B01G260000.1	Wheat	nucleus	44.72	46.03
TraesCS1A01G249300.1	Wheat	nucleus	44.31	45.61
Zm00001d038133_P002	Maize	nucleus	43.5	45.34
EES19489	Sorghum	cytosol	43.5	45.15
KRH40216	Soybean	nucleus	34.15	44.68
KRH48888	Soybean	nucleus	34.55	42.08
KRH01000	Soybean	nucleus	34.55	41.46
KRH66451	Soybean	cytosol	34.15	40.19
KRH26828	Soybean	cytosol	36.18	38.36
KRH22528	Soybean	nucleus	36.18	38.36
HORVU1Hr1G062210.1	Barley	nucleus, plastid	44.72	36.18
KRG88936	Soybean	nucleus	31.3	34.53
KRH65411	Soybean	cytosol, nucleus, plastid	30.49	33.48
KRH07327	Soybean	endoplasmic reticulum, extracellular	20.33	33.11
KRH76137	Soybean	plastid	30.08	33.04

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100783668	MapMan:13.1.1.1.7	EMBL:ACUP02012113	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	EnsemblPlantsGene:GLYMA_19G156200	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019901	UniProt:I1N9H5	EnsemblPlants:KRG95527	ProteinID:KRG95527	ProteinID:KRG95527.1
PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF40	SUPFAM:SSF47954	UniParc:UPI000233ED25
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:41682788..41685602

Molecular Weight (calculated)

28147.8 Da

IEP (calculated)

8.221

GRAVY (calculated)

-0.207

Length

246 amino acids

Sequence
(BLAST)

001: MYKNKNKHTH PPQRYSHHFE ELHNFVFLDM GSLALETEDV ISDIYLSLGL KESDKGVGGP RVLSLLSSLL ERSVQRNETS LEAKHIKDVV TVFHGLRAPT
101: LSVRKYIDRI FKYSGCSPSC FVVAHIYVDR FIQHTEIKLT SLNVHRLLIT SIMLAAKFID DAFYNNAYYA KVGGVSTSEL NRFEMSFLFG IDFRLQVGVE
201: TFGRYCRQLE KEAAEVVQIE RPMQACRIKE SWSNKDDPTC ASTIAR

Best Arabidopsis Sequence Match ( AT3G63120.2 )
(BLAST)

001: MDSLATDPAF IDSDVYLRLG LIIEGKRLKK PPTVLSRLSS SLERSLLLNH DDKILLGSPD SVTVFDGRSP PEISIAHYLD RIFKYSCCSP SCFVIAHIYI
101: DHFLHKTRAL LKPLNVHRLI ITTVMLAAKV FDDRYFNNAY YARVGGVTTR ELNRLEMELL FTLDFKLQVD PQTFHTHCCQ LEKQNRDGFQ IEWPIKEACR
201: ANKETWQKRT PDSLCSQTTA R

Arabidopsis Description

CYCU3-1Cyclin-U3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB60]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.