Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56463 | Canola | cytosol | 95.48 | 95.05 |
| AT3G63120.2 | Thale cress | cytosol | 77.38 | 77.38 |
| PGSC0003DMT400033559 | Potato | nucleus | 48.42 | 49.31 |
| KRH67205 | Soybean | nucleus | 47.96 | 48.85 |
| VIT_07s0104g00540.t01 | Wine grape | nucleus | 48.87 | 47.79 |
| Solyc09g065200.2.1 | Tomato | nucleus | 47.96 | 44.73 |
| KRG95527 | Soybean | nucleus | 47.96 | 43.09 |
| CDY48257 | Canola | cytosol | 38.01 | 42.21 |
| CDY30482 | Canola | cytosol | 38.01 | 41.79 |
| CDY23452 | Canola | cytosol | 38.01 | 41.79 |
| CDX95612 | Canola | cytosol | 36.65 | 40.91 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.89 | 40.59 |
| CDX83419 | Canola | cytosol | 36.65 | 40.5 |
| CDY55656 | Canola | cytosol | 17.19 | 39.58 |
| Os05t0398000-01 | Rice | cytosol | 24.43 | 39.13 |
| CDY64256 | Canola | cytosol | 15.38 | 38.64 |
| TraesCS1B01G260000.1 | Wheat | nucleus | 41.63 | 38.49 |
| TraesCS1A01G249300.1 | Wheat | nucleus | 40.72 | 37.66 |
| CDX74684 | Canola | cytosol | 38.46 | 37.61 |
| TraesCS1D01G248800.1 | Wheat | nucleus | 39.82 | 37.61 |
| EES19489 | Sorghum | cytosol | 39.82 | 37.13 |
| CDY18769 | Canola | nucleus | 35.29 | 36.79 |
| CDY27777 | Canola | cytosol | 34.84 | 36.32 |
| Zm00001d038133_P002 | Maize | nucleus | 38.46 | 36.02 |
| CDY18791 | Canola | nucleus | 34.84 | 35.98 |
| CDY02124 | Canola | nucleus | 16.74 | 32.74 |
| CDY18953 | Canola | mitochondrion, plastid | 32.58 | 32.43 |
| CDX74709 | Canola | mitochondrion, plastid | 32.58 | 32.43 |
| CDY38647 | Canola | cytosol | 30.32 | 31.9 |
| CDY54190 | Canola | cytosol | 30.32 | 31.9 |
| CDX95626 | Canola | mitochondrion, plastid | 32.13 | 31.7 |
| CDX83405 | Canola | mitochondrion, plastid | 32.13 | 31.7 |
| CDX67834 | Canola | cytosol | 32.58 | 31.17 |
| CDY41156 | Canola | plastid | 32.58 | 30.9 |
| CDY08862 | Canola | cytosol | 29.41 | 30.81 |
| CDX98427 | Canola | cytosol | 32.13 | 30.6 |
| CDX70040 | Canola | nucleus | 29.86 | 30.56 |
| CDX71800 | Canola | plastid | 32.13 | 30.21 |
| CDY65234 | Canola | nucleus | 28.96 | 29.63 |
| HORVU1Hr1G062210.1 | Barley | nucleus, plastid | 38.91 | 28.29 |
| CDY05158 | Canola | cytosol, nucleus, peroxisome | 33.94 | 23.58 |
| CDY02123 | Canola | mitochondrion | 9.95 | 20.18 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | GO:A0A078CIU9 | EnsemblPlants:CDX76682 | ProteinID:CDX76682 | ProteinID:CDX76682.1 |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:GSBRNA2T00127158001 | PFAM:PF08613 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 |
| PANTHER:PTHR15615:SF40 | SUPFAM:SSF47954 | UniParc:UPI0004EC8071 | SEG:seg | : | : |
Description
BnaC08g32680D
Coordinates
chrLK031808:-:509057..510350
Molecular Weight (calculated)
25227.4 Da
IEP (calculated)
7.499
GRAVY (calculated)
-0.149
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: METLATDPGF IDSGVYLRLG LIVEGKIRLK KPPTLLSRLA SSLERSLLLH DESPPEFQHS AVTVFDGRSP PEITISDYLD RIFIYSRCSP SCFVAAYIYI
101: LQFLDVTRAH LTPLNVHRLV VTSVMLAAKV FDDRYYNNAY YARVGGVSTR ELNRLEMKLL FALDFKLQVD PHTFHAHCCQ LEKQNSDGIQ IEWPIKEACR
201: LDKETWRKST PESVCSQTTA R
101: LQFLDVTRAH LTPLNVHRLV VTSVMLAAKV FDDRYYNNAY YARVGGVSTR ELNRLEMKLL FALDFKLQVD PHTFHAHCCQ LEKQNSDGIQ IEWPIKEACR
201: LDKETWRKST PESVCSQTTA R
001: MDSLATDPAF IDSDVYLRLG LIIEGKRLKK PPTVLSRLSS SLERSLLLNH DDKILLGSPD SVTVFDGRSP PEISIAHYLD RIFKYSCCSP SCFVIAHIYI
101: DHFLHKTRAL LKPLNVHRLI ITTVMLAAKV FDDRYFNNAY YARVGGVTTR ELNRLEMELL FTLDFKLQVD PQTFHTHCCQ LEKQNRDGFQ IEWPIKEACR
201: ANKETWQKRT PDSLCSQTTA R
101: DHFLHKTRAL LKPLNVHRLI ITTVMLAAKV FDDRYFNNAY YARVGGVTTR ELNRLEMELL FTLDFKLQVD PQTFHTHCCQ LEKQNRDGFQ IEWPIKEACR
201: ANKETWQKRT PDSLCSQTTA R
Arabidopsis Description
CYCU3-1Cyclin-U3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB60]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.