Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007729.1-P | Field mustard | cytosol | 78.28 | 77.93 |
| CDY56463 | Canola | cytosol | 78.28 | 77.93 |
| CDX76682 | Canola | cytosol | 77.38 | 77.38 |
| PGSC0003DMT400033559 | Potato | nucleus | 51.13 | 52.07 |
| KRH67205 | Soybean | nucleus | 51.13 | 52.07 |
| VIT_07s0104g00540.t01 | Wine grape | nucleus | 50.68 | 49.56 |
| Solyc09g065200.2.1 | Tomato | nucleus | 49.77 | 46.41 |
| KRG95527 | Soybean | nucleus | 51.13 | 45.94 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.8 | 41.42 |
| Os05t0398000-01 | Rice | cytosol | 24.89 | 39.86 |
| EES19489 | Sorghum | cytosol | 42.53 | 39.66 |
| AT2G44740.1 | Thale cress | cytosol | 35.75 | 39.11 |
| TraesCS1B01G260000.1 | Wheat | nucleus | 41.18 | 38.08 |
| TraesCS1D01G248800.1 | Wheat | nucleus | 40.27 | 38.03 |
| Zm00001d038133_P002 | Maize | nucleus | 40.27 | 37.71 |
| TraesCS1A01G249300.1 | Wheat | nucleus | 40.72 | 37.66 |
| AT3G05327.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 33.94 | 35.38 |
| AT3G21870.1 | Thale cress | cytosol | 33.03 | 34.76 |
| AT2G45080.1 | Thale cress | cytosol | 34.39 | 34.23 |
| AT3G60550.1 | Thale cress | mitochondrion, nucleus, plastid | 34.39 | 33.04 |
| AT5G61650.1 | Thale cress | nucleus | 31.67 | 31.96 |
| AT5G07450.1 | Thale cress | nucleus | 30.77 | 31.48 |
| HORVU1Hr1G062210.1 | Barley | nucleus, plastid | 40.27 | 29.28 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | EntrezGene:825487 | ProteinID:AEE80437.1 | EMBL:AK176751 | EMBL:AK222234 |
| EMBL:AK230449 | ProteinID:ANM64214.1 | ArrayExpress:AT3G63120 | EnsemblPlantsGene:AT3G63120 | RefSeq:AT3G63120 | TAIR:AT3G63120 |
| RefSeq:AT3G63120-TAIR-G | EnsemblPlants:AT3G63120.2 | EMBL:AY087409 | Unigene:At.5157 | ProteinID:CAB87757.1 | Symbol:CYCP1;1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | GO:GO:0051301 | RefSeq:NP_001326259.1 | RefSeq:NP_191871.1 |
| PFAM:PF08613 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF40 | UniProt:Q8LB60 | SUPFAM:SSF47954 |
| UniParc:UPI00000336EA | SEG:seg | : | : | : | : |
Description
CYCU3-1Cyclin-U3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB60]
Coordinates
chr3:-:23322359..23324281
Molecular Weight (calculated)
25432.7 Da
IEP (calculated)
8.286
GRAVY (calculated)
-0.234
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSLATDPAF IDSDVYLRLG LIIEGKRLKK PPTVLSRLSS SLERSLLLNH DDKILLGSPD SVTVFDGRSP PEISIAHYLD RIFKYSCCSP SCFVIAHIYI
101: DHFLHKTRAL LKPLNVHRLI ITTVMLAAKV FDDRYFNNAY YARVGGVTTR ELNRLEMELL FTLDFKLQVD PQTFHTHCCQ LEKQNRDGFQ IEWPIKEACR
201: ANKETWQKRT PDSLCSQTTA R
101: DHFLHKTRAL LKPLNVHRLI ITTVMLAAKV FDDRYFNNAY YARVGGVTTR ELNRLEMELL FTLDFKLQVD PQTFHTHCCQ LEKQNRDGFQ IEWPIKEACR
201: ANKETWQKRT PDSLCSQTTA R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.