Factsheet for Zm00001d038133_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19489	Sorghum	cytosol	92.37	91.98
Os05t0398000-01	Rice	cytosol	44.07	75.36
TraesCS1D01G248800.1	Wheat	nucleus	72.03	72.65
TraesCS1B01G260000.1	Wheat	nucleus	71.19	70.29
TraesCS1A01G249300.1	Wheat	nucleus	70.34	69.46
HORVU1Hr1G062210.1	Barley	nucleus, plastid	69.92	54.28
GSMUA_AchrUn_...	Banana	nucleus	54.24	53.56
PGSC0003DMT400033559	Potato	nucleus	45.76	49.77
KRG96839	Soybean	nucleus	36.44	48.86
KRH67205	Soybean	nucleus	44.92	48.85
VIT_07s0104g00540.t01	Wine grape	nucleus	46.61	48.67
Solyc09g065200.2.1	Tomato	nucleus	44.92	44.73
KRG95527	Soybean	nucleus	45.34	43.5
VIT_14s0128g00410.t01	Wine grape	nucleus	36.86	40.85
AT3G63120.2	Thale cress	cytosol	37.71	40.27
CDY27777	Canola	cytosol	36.02	40.09
Solyc01g098930.2.1	Tomato	cytosol	38.14	39.82
PGSC0003DMT400008886	Potato	nucleus	38.14	39.82
CDY18791	Canola	nucleus	36.02	39.72
CDY18769	Canola	nucleus	35.17	39.15
PGSC0003DMT400081162	Potato	cytosol	16.53	39.0
AT3G05327.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	34.75	38.68
CDX76682	Canola	cytosol	36.02	38.46
CDY56463	Canola	cytosol	36.02	38.29
Bra007729.1-P	Field mustard	cytosol	36.02	38.29
Zm00001d029970_P001	Maize	nucleus	34.32	35.84
Zm00001d002788_P001	Maize	cytosol	30.51	34.78
Zm00001d017441_P001	Maize	cytosol	29.66	33.49
Zm00001d015092_P001	Maize	nucleus	32.63	32.08
CDY05158	Canola	cytosol, nucleus, peroxisome	33.05	24.53
Zm00001d002733_P001	Maize	cytosol	23.31	23.21
Zm00001d026360_P001	Maize	cytosol	27.12	22.7

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100283473	MapMan:13.1.1.1.7	ProteinID:AQK85749.1	ProteinID:AQK85750.1	UniProt:B8A1L1
EMBL:BT055453	EMBL:BT085201	EMBL:BT087236	InterPro:Cyclin-like_sf	InterPro:Cyclin_PHO80-like	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	PFAM:PF08613	PANTHER:PTHR15615
PANTHER:PTHR15615:SF40	SUPFAM:SSF47954	UniParc:UPI000191769D	EnsemblPlantsGene:Zm00001d038133	EnsemblPlants:Zm00001d038133_P002	EnsemblPlants:Zm00001d038133_T002
SEG:seg	:	:	:	:	:

Description

Cyclin-U3-1

Coordinates

chr6:-:148944655..148947525

Molecular Weight (calculated)

26773.2 Da

IEP (calculated)

4.852

GRAVY (calculated)

-0.018

Length

236 amino acids

Sequence
(BLAST)

001: MTMESPTTAA GGELESYFSL GLTVSHSQKD NAEFPKVLLL LSAYLDKTVQ QNEELLDSSK IKESTTIFHG QRVPELSIKL YAERIFKYAK CSPSCFVLAL
101: IYMERYLQQP NIYMTSFSVH RLLITSVVVA AKFIDDAFFN NAYYGRVGGI STREMNMLEL DLLFGLDFRL KVDIETFESY CLQLEEALVL VLERPIQVQE
201: ANVTKHLICN SSADETCKHE LGLERYSSQA VQGCSW

Best Arabidopsis Sequence Match ( AT2G44740.1 )
(BLAST)

001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV

Arabidopsis Description

CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.