Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d027373_P003 | |
| Zm00001d048497_P002 | |
| Zm00001d053930_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11236 | Sorghum | cytosol | 80.59 | 81.62 |
| Os04t0552300-01 | Rice | cytosol | 73.0 | 79.72 |
| TraesCS2A01G413300.1 | Wheat | cytosol | 69.62 | 71.43 |
| TraesCS2D01G411300.1 | Wheat | cytosol | 69.2 | 70.69 |
| TraesCS2B01G432000.1 | Wheat | cytosol | 68.78 | 70.26 |
| GSMUA_Achr4P24630_001 | Banana | nucleus | 51.9 | 53.02 |
| PGSC0003DMT400066949 | Potato | nucleus | 43.04 | 46.36 |
| KRG88936 | Soybean | nucleus | 43.04 | 45.74 |
| Solyc01g090800.2.1 | Tomato | cytosol | 42.19 | 45.45 |
| KRH76137 | Soybean | plastid | 42.62 | 45.09 |
| Bra004888.1-P | Field mustard | mitochondrion, plastid | 42.19 | 45.05 |
| CDX74709 | Canola | mitochondrion, plastid | 42.19 | 45.05 |
| CDY18953 | Canola | mitochondrion, plastid | 42.19 | 45.05 |
| CDX83405 | Canola | mitochondrion, plastid | 42.19 | 44.64 |
| CDX95626 | Canola | mitochondrion, plastid | 42.19 | 44.64 |
| Bra000369.1-P | Field mustard | plastid | 42.19 | 44.64 |
| AT2G45080.1 | Thale cress | cytosol | 40.93 | 43.69 |
| VIT_15s0021g02680.t01 | Wine grape | plastid | 42.19 | 43.67 |
| KRH65411 | Soybean | cytosol, nucleus, plastid | 40.51 | 42.86 |
| Bra003420.1-P | Field mustard | cytosol | 39.66 | 42.73 |
| CDY41156 | Canola | plastid | 41.77 | 42.49 |
| Bra007544.1-P | Field mustard | plastid | 41.77 | 42.49 |
| AT3G60550.1 | Thale cress | mitochondrion, nucleus, plastid | 40.51 | 41.74 |
| CDX67834 | Canola | cytosol | 40.51 | 41.56 |
| CDX71800 | Canola | plastid | 40.93 | 41.28 |
| CDX98427 | Canola | cytosol | 38.82 | 39.66 |
| Zm00001d017441_P001 | Maize | cytosol | 33.76 | 38.28 |
| Zm00001d029970_P001 | Maize | nucleus | 32.91 | 34.51 |
| Zm00001d002788_P001 | Maize | cytosol | 28.69 | 32.85 |
| Zm00001d015092_P001 | Maize | nucleus | 30.8 | 30.42 |
| Zm00001d026360_P001 | Maize | cytosol | 29.96 | 25.18 |
| Zm00001d038133_P002 | Maize | nucleus | 23.21 | 23.31 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:103646104 | MapMan:13.1.1.1.7 | UniProt:A0A1D6E3W5 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 |
| ProteinID:ONM15218.1 | PFAM:PF08613 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF15 | SUPFAM:SSF47954 | UniParc:UPI000221F9E8 |
| EnsemblPlantsGene:Zm00001d002733 | EnsemblPlants:Zm00001d002733_P001 | EnsemblPlants:Zm00001d002733_T001 | SEG:seg | : | : |
Description
Cyclin-U2-1
Coordinates
chr2:-:20711228..20711941
Molecular Weight (calculated)
25784.6 Da
IEP (calculated)
7.502
GRAVY (calculated)
-0.071
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSELPSES DAFAFPCGDD GTTSPALSPP VVISVLASIL ERHIALNERA MAAASGLDQS APGDKDDDDD SDPAAAAARK RARAFDGGTV LDMSLHAFLE
101: RFSRYAHVSP QVYVVAYAYL DRLRRGAGVR VVRANAQRLL TTAILVASKF VEDRNYRNSY FAAVGGLAAA ELSALELDFL FLMQFRLNVC AGVFRSYCRH
201: LEREVSHGGW YRVDRRLGRP LVCAGEARAQ QRQAAAV
101: RFSRYAHVSP QVYVVAYAYL DRLRRGAGVR VVRANAQRLL TTAILVASKF VEDRNYRNSY FAAVGGLAAA ELSALELDFL FLMQFRLNVC AGVFRSYCRH
201: LEREVSHGGW YRVDRRLGRP LVCAGEARAQ QRQAAAV
001: MDSLAISPRK LRSDLYSYSY QDDSNTVPLV ISVLSSLIER TLARNERISR SYGGFGKTRV FDCREIPDMT IQSYLERIFR YTKAGPSVYV VAYVYIDRFC
101: QNNQGFRISL TNVHRLLITT IMIASKYVED MNYKNSYFAK VGGLETEDLN NLELEFLFLM GFKLHVNVSV FESYCCHLER EVSIGGGYQI EKALRCAEEI
201: KSRQIVQDPK HHHHHQFSRI ML
101: QNNQGFRISL TNVHRLLITT IMIASKYVED MNYKNSYFAK VGGLETEDLN NLELEFLFLM GFKLHVNVSV FESYCCHLER EVSIGGGYQI EKALRCAEEI
201: KSRQIVQDPK HHHHHQFSRI ML
Arabidopsis Description
CYCU2-1Cycp3 [Source:UniProtKB/TrEMBL;Acc:A0A178VTM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.