CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX83047
CDX87018
CDY05870
CDY66197
CDY67496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60550.1	CDX68497	AT3G48750.1	15197472
AT3G60550.1	CDX83047	AT3G48750.1	15197472
AT3G60550.1	CDX87018	AT3G48750.1	15197472
AT3G60550.1	CDY05870	AT3G48750.1	15197472
AT3G60550.1	CDY66197	AT3G48750.1	15197472
AT3G60550.1	CDY67496	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003420.1-P	Field mustard	cytosol	95.24	100.0
CDX98427	Canola	cytosol	95.67	95.26
AT3G60550.1	Thale cress	mitochondrion, nucleus, plastid	90.48	90.87
CDY41156	Canola	plastid	90.04	89.27
CDX71800	Canola	plastid	89.18	87.66
CDX74709	Canola	mitochondrion, plastid	83.12	86.49
CDY18953	Canola	mitochondrion, plastid	82.68	86.04
CDX83405	Canola	mitochondrion, plastid	81.39	83.93
CDX95626	Canola	mitochondrion, plastid	81.39	83.93
KRG88936	Soybean	nucleus	69.26	71.75
KRH76137	Soybean	plastid	69.26	71.43
KRH65411	Soybean	cytosol, nucleus, plastid	68.83	70.98
VIT_15s0021g02680.t01	Wine grape	plastid	69.7	70.31
PGSC0003DMT400066949	Potato	nucleus	66.67	70.0
Solyc01g090800.2.1	Tomato	cytosol	66.23	69.55
GSMUA_Achr4P24630_001	Banana	nucleus	55.84	55.6
Os04t0552300-01	Rice	cytosol	42.86	45.62
EES11236	Sorghum	cytosol	41.56	41.03
Zm00001d002733_P001	Maize	cytosol	41.56	40.51
TraesCS2A01G413300.1	Wheat	cytosol	39.83	39.83
TraesCS2B01G432000.1	Wheat	cytosol	39.39	39.22
TraesCS2D01G411300.1	Wheat	cytosol	39.39	39.22
CDY30482	Canola	cytosol	33.77	38.81
CDY23452	Canola	cytosol	33.77	38.81
CDY48257	Canola	cytosol	32.9	38.19
CDX95612	Canola	cytosol	32.47	37.88
CDY64256	Canola	cytosol	14.29	37.5
CDX83419	Canola	cytosol	32.47	37.5
CDY55656	Canola	cytosol	14.72	35.42
CDY02124	Canola	nucleus	16.88	34.51
CDX74684	Canola	cytosol	32.9	33.63
CDY54190	Canola	cytosol	30.3	33.33
CDY38647	Canola	cytosol	30.3	33.33
CDX70040	Canola	nucleus	31.17	33.33
CDY56463	Canola	cytosol	31.6	32.88
CDY65234	Canola	nucleus	30.74	32.87
CDY08862	Canola	cytosol	29.87	32.7
CDX76682	Canola	cytosol	31.17	32.58
CDY18791	Canola	nucleus	29.0	31.31
CDY18769	Canola	nucleus	28.14	30.66
CDY27777	Canola	cytosol	27.27	29.72
CDY02123	Canola	mitochondrion	12.55	26.61
CDY05158	Canola	cytosol, nucleus, peroxisome	25.54	18.55

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	GO:A0A078BVP6	EnsemblPlants:CDX67834	ProteinID:CDX67834	ProteinID:CDX67834.1
InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019901	EnsemblPlantsGene:GSBRNA2T00099031001	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615
PANTHER:PTHR15615:SF15	SUPFAM:SSF47954	UniParc:UPI0004EE30B2	:	:	:

Description

BnaA07g18740D

Coordinates

chrLK031787:+:2488567..2489543

Molecular Weight (calculated)

26569.1 Da

IEP (calculated)

8.455

GRAVY (calculated)

-0.122

Length

231 amino acids

Sequence
(BLAST)

001: MAVSNSLIIS PRELRSDLYS YSYQDNSKTP LVISLLSSLI DRTLTRNQRI SRRASPACYS SCGGGKTHIF DCREIPDLTI QSYLERIFRY TKAGPSVYVV
101: AYVYIDRFCQ INPGFKISLT NVHRLLITTI MIASKYVEDL NYRNSYFAKV GGLETEDLNR LELEFLFLMG FKLHVNVSVF ESYCCHLERE VSFGGGYRIE
201: KALRCAEEIK SGQMIVQDPN HHHHQFARIL L

Best Arabidopsis Sequence Match ( AT3G60550.1 )
(BLAST)

001: MAVSNSLTIS PRKLRSDLYS YSYQNNSKTP LVISVLSSLI DRTLTRNERI SRRALPSSGA GGKTQIFDCR EIPDMTIQSY LGRIFRYTKA GPSVYVVAYV
101: YIDRFCQTNP GFRISLTNVH RLLITTIMIA SKYVEDLNYR NSYFAKVGGL ETEDLNKLEL EFLFLMGFKL HVNVSVFESY CCHLEREVSF GGGYQIEKAL
201: RCAEEIKSRQ MIIQDPKHHH HHHQLARILL

Arabidopsis Description

CYCU2-2Cyclin-U2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M205]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.