Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55656 | Canola | cytosol | 57.95 | 53.12 |
| CDY38647 | Canola | cytosol | 77.27 | 32.38 |
| AT3G21870.1 | Thale cress | cytosol | 77.27 | 32.38 |
| CDY54190 | Canola | cytosol | 77.27 | 32.38 |
| Bra031315.1-P | Field mustard | cytosol | 76.14 | 31.9 |
| KRH22528 | Soybean | nucleus | 67.05 | 25.43 |
| VIT_12s0059g02480.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 57.95 | 24.88 |
| KRH26828 | Soybean | cytosol | 64.77 | 24.57 |
| PGSC0003DMT400067297 | Potato | cytosol, nucleus | 62.5 | 24.44 |
| Solyc07g052610.2.1 | Tomato | cytosol | 63.64 | 23.24 |
| GSMUA_Achr11P... | Banana | mitochondrion | 44.32 | 22.54 |
| CDX95626 | Canola | mitochondrion, plastid | 43.18 | 16.96 |
| CDX83405 | Canola | mitochondrion, plastid | 43.18 | 16.96 |
| CDX95612 | Canola | cytosol | 37.5 | 16.67 |
| CDX83419 | Canola | cytosol | 37.5 | 16.5 |
| CDY30482 | Canola | cytosol | 37.5 | 16.42 |
| CDY23452 | Canola | cytosol | 37.5 | 16.42 |
| TraesCS2B01G503500.1 | Wheat | cytosol | 45.45 | 16.39 |
| CDX74709 | Canola | mitochondrion, plastid | 40.91 | 16.22 |
| CDY18953 | Canola | mitochondrion, plastid | 40.91 | 16.22 |
| CDY48257 | Canola | cytosol | 36.36 | 16.08 |
| TraesCS2A01G479100.1 | Wheat | cytosol | 44.32 | 15.98 |
| TraesCS2D01G478400.1 | Wheat | cytosol | 44.32 | 15.98 |
| HORVU2Hr1G107830.1 | Barley | cytosol | 44.32 | 15.79 |
| CDX76682 | Canola | cytosol | 38.64 | 15.38 |
| CDY56463 | Canola | cytosol | 38.64 | 15.32 |
| CDY18791 | Canola | nucleus | 36.36 | 14.95 |
| Os04t0628900-00 | Rice | nucleus | 44.32 | 14.77 |
| CDY27777 | Canola | cytosol | 35.23 | 14.62 |
| CDY18769 | Canola | nucleus | 35.23 | 14.62 |
| CDX74684 | Canola | cytosol | 37.5 | 14.6 |
| CDY41156 | Canola | plastid | 38.64 | 14.59 |
| CDX71800 | Canola | plastid | 38.64 | 14.47 |
| CDX67834 | Canola | cytosol | 37.5 | 14.29 |
| CDX98427 | Canola | cytosol | 37.5 | 14.22 |
| OQU82384 | Sorghum | nucleus | 34.09 | 14.08 |
| CDY08862 | Canola | cytosol | 32.95 | 13.74 |
| Zm00001d026360_P001 | Maize | cytosol | 40.91 | 12.77 |
| CDY02124 | Canola | nucleus | 15.91 | 12.39 |
| CDX70040 | Canola | nucleus | 28.41 | 11.57 |
| CDY65234 | Canola | nucleus | 27.27 | 11.11 |
| CDY05158 | Canola | cytosol, nucleus, peroxisome | 35.23 | 9.75 |
| CDY02123 | Canola | mitochondrion | 11.36 | 9.17 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | GO:A0A078JFC8 | UniProt:A0A078JFC8 | EnsemblPlants:CDY64256 | ProteinID:CDY64256 |
| ProteinID:CDY64256.1 | ncoils:Coil | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:GSBRNA2T00041047001 | PFAM:PF08613 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF0 |
| UniParc:UPI0004EE4CC4 | SEG:seg | : | : | : | : |
Description
BnaCnng43570DBnaCnng43570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFC8]
Coordinates
chrLK034429:+:21714..22350
Molecular Weight (calculated)
10564.8 Da
IEP (calculated)
8.997
GRAVY (calculated)
-0.320
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MLTIISQMME KLVAQNDIAK YLERIYKYTK RSPACFVHYT NEFYARVAGV SNRDLNKMEL ELLFLLDFRV TAFESYSFHD RERDAIKR
001: MLTAAGDDEL DPVVGPESAT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPACFVVG YVYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV
Arabidopsis Description
CYCU1-1Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.