Factsheet for GSMUA_Achr11P25890_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21870.1	GSMUA_Achr11P...	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0059g02480.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	57.8	48.78
CDY55656	Canola	cytosol	26.59	47.92
CDY64256	Canola	cytosol	22.54	44.32
AT3G21870.1	Thale cress	cytosol	52.6	43.33
CDY38647	Canola	cytosol	52.02	42.86
CDY54190	Canola	cytosol	52.02	42.86
Bra031315.1-P	Field mustard	cytosol	51.45	42.38
PGSC0003DMT400067297	Potato	cytosol, nucleus	53.18	40.89
KRH26828	Soybean	cytosol	52.6	39.22
KRH22528	Soybean	nucleus	52.6	39.22
Solyc07g052610.2.1	Tomato	cytosol	51.45	36.93
OQU82384	Sorghum	nucleus	41.04	33.33
GSMUA_Achr2P10440_001	Banana	cytosol	37.57	32.99
GSMUA_Achr5P12540_001	Banana	cytosol, nucleus, plastid	38.15	32.04
GSMUA_Achr1P00510_001	Banana	nucleus	36.99	31.22
TraesCS2B01G503500.1	Wheat	cytosol	43.93	31.15
TraesCS2A01G479100.1	Wheat	cytosol	43.35	30.74
HORVU2Hr1G107830.1	Barley	cytosol	43.35	30.36
TraesCS2D01G478400.1	Wheat	cytosol	42.77	30.33
Os04t0628900-00	Rice	nucleus	46.24	30.3
Zm00001d026360_P001	Maize	cytosol	43.35	26.6
GSMUA_AchrUn_...	Banana	nucleus	34.1	24.69
GSMUA_Achr4P24630_001	Banana	nucleus	30.64	22.84

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	EnsemblPlantsGene:GSMUA_Achr11G25890_001	EnsemblPlants:GSMUA_Achr11P25890_001
EnsemblPlants:GSMUA_Achr11T25890_001	UniProt:M0RVG9	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF0
SUPFAM:SSF47954	UniParc:UPI0002963163	SEG:seg	:	:	:

Description

Nuc-1 negative regulatory protein preg, putative [Source:GMGC_GENE;Acc:GSMUA_Achr11G25890_001]

Coordinates

chr11:-:24876666..24878082

Molecular Weight (calculated)

19232.2 Da

IEP (calculated)

10.681

GRAVY (calculated)

-0.091

Length

173 amino acids

Sequence
(BLAST)

001: MRGRGLAAFR GTRSPGISVG KYLERLWRYT GCSSSCFVVG FVYIDRVAHR HPASPVVSLN VHRLVLTSLL IASKVLDDKH HNNAFFAKVG GVSNAELNRM
101: ELELLFLLDF GLVVSSRVFE SYRRHLEKEK MLARATQEMG RAVVDASANG GVHGLRNGSS RHSFSSPRCS IDW

Best Arabidopsis Sequence Match ( AT3G21870.1 )
(BLAST)

001: MLTAAGDDEL DPVVGPESAT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPACFVVG YVYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV

Arabidopsis Description

CYCU1-1Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.