Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G44740.1 | GSMUA_Achr11P... | AT3G48750.1 | 15197472 |
| AT5G07450.1 | GSMUA_Achr11P... | AT3G48750.1 | 15197472 |
| AT5G61650.1 | GSMUA_Achr11P... | AT3G48750.1 | 15197472 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P00510_001 | Banana | nucleus | 79.7 | 76.59 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 76.14 | 72.82 |
| KRH71916 | Soybean | cytosol | 30.96 | 61.0 |
| KRH40216 | Soybean | nucleus | 52.79 | 55.32 |
| CDX95612 | Canola | cytosol | 55.33 | 55.05 |
| KRH48888 | Soybean | nucleus | 56.35 | 54.95 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 56.85 | 54.9 |
| CDX83419 | Canola | cytosol | 55.33 | 54.5 |
| AT2G44740.1 | Thale cress | cytosol | 55.84 | 54.46 |
| CDY48257 | Canola | cytosol | 54.31 | 53.77 |
| Bra037638.1-P | Field mustard | cytosol | 54.82 | 53.73 |
| CDY30482 | Canola | cytosol | 54.82 | 53.73 |
| CDY23452 | Canola | cytosol | 54.82 | 53.73 |
| Bra000361.1-P | Field mustard | cytosol | 53.81 | 53.27 |
| KRH01000 | Soybean | nucleus | 55.33 | 53.17 |
| CDY02124 | Canola | nucleus | 30.46 | 53.1 |
| Bra012933.1-P | Field mustard | nucleus | 30.46 | 53.1 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 51.78 | 52.58 |
| KRH66451 | Soybean | cytosol | 54.82 | 51.67 |
| PGSC0003DMT400080410 | Potato | nucleus | 52.79 | 51.23 |
| Solyc03g093790.2.1 | Tomato | nucleus | 50.25 | 50.51 |
| Solyc01g089850.2.1 | Tomato | nucleus | 52.79 | 50.49 |
| PGSC0003DMT400080046 | Potato | nucleus | 52.28 | 49.52 |
| CDY65234 | Canola | nucleus | 51.78 | 47.22 |
| Bra009262.1-P | Field mustard | nucleus | 51.78 | 47.22 |
| CDX70040 | Canola | nucleus | 51.27 | 46.76 |
| CDY08862 | Canola | cytosol | 49.75 | 46.45 |
| AT5G61650.1 | Thale cress | nucleus | 51.27 | 46.12 |
| Bra004863.1-P | Field mustard | nucleus | 51.78 | 45.95 |
| CDX74684 | Canola | cytosol | 52.28 | 45.58 |
| AT5G07450.1 | Thale cress | nucleus | 49.24 | 44.91 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 30.46 | 39.74 |
| GSMUA_Achr11P... | Banana | mitochondrion | 32.99 | 37.57 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.65 | 35.98 |
| CDY02123 | Canola | mitochondrion | 18.27 | 33.03 |
| GSMUA_Achr4P24630_001 | Banana | nucleus | 38.07 | 32.33 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:GSMUA_Achr2G10440_001 | EnsemblPlants:GSMUA_Achr2P10440_001 |
| EnsemblPlants:GSMUA_Achr2T10440_001 | UniProt:M0S6T5 | PFAM:PF08613 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF28 |
| SUPFAM:SSF47954 | UniParc:UPI00029584FD | SEG:seg | : | : | : |
Description
Cyclin-P4-1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G10440_001]
Coordinates
chr2:-:13544050..13545884
Molecular Weight (calculated)
22488.2 Da
IEP (calculated)
6.613
GRAVY (calculated)
0.136
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELGEEPHA IPRVVAVLST ILERLAERND AVRRPLALHH CASAFHGLTK PAISVRSYLE RIFRYANCSP SCYVVAYIYI DRFLWRHPAV FLDSFNVHRF
101: LITSVLTAVK FMDDIYYNNA YFAKVGGISL MEMNYLEVDF LFGVGFELNV TPVIFSSYCS TLQREMYLES PASPPRLHCC LTEEESSSCQ QKQQLAV
101: LITSVLTAVK FMDDIYYNNA YFAKVGGISL MEMNYLEVDF LFGVGFELNV TPVIFSSYCS TLQREMYLES PASPPRLHCC LTEEESSSCQ QKQQLAV
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.