Factsheet for VIT_15s0021g01280.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40216	Soybean	nucleus	70.59	76.6
KRH01000	Soybean	nucleus	75.49	75.12
VIT_16s0013g00630.t01	Wine grape	plasma membrane	65.69	69.07
GSMUA_Achr2P10440_001	Banana	cytosol	54.9	56.85
OQU85741	Sorghum	extracellular	36.76	51.02
Os10t0563900-01	Rice	nucleus	52.45	50.47
GSMUA_Achr1P00510_001	Banana	nucleus	49.02	48.78
GSMUA_Achr5P12540_001	Banana	cytosol, nucleus, plastid	49.02	48.54
TraesCS6B01G282600.1	Wheat	cytosol	49.02	48.08
TraesCS6A01G241800.1	Wheat	nucleus	49.02	47.17
HORVU6Hr1G061870.1	Barley	cytosol	48.53	47.14
TraesCS6D01G223800.1	Wheat	cytosol	47.55	46.63
Zm00001d029970_P001	Maize	nucleus	50.98	46.02
Os02t0652000-01	Rice	cytosol	47.06	45.28
Zm00001d017441_P001	Maize	cytosol	46.08	44.98
Os04t0544200-01	Rice	nucleus	45.59	43.87
EER94473	Sorghum	nucleus	50.98	43.7
EES12591	Sorghum	cytosol	45.59	42.66
TraesCS2B01G410000.1	Wheat	nucleus	45.59	42.47
TraesCS1D01G218800.1	Wheat	nucleus	50.0	42.32
TraesCS2D01G389800.1	Wheat	nucleus	45.59	42.08
Zm00001d002788_P001	Maize	cytosol	42.65	42.03
TraesCS1A01G217000.1	Wheat	cytosol	49.51	41.56
TraesCS1B01G230100.1	Wheat	nucleus	50.0	41.46
VIT_12s0059g02480.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	37.75	37.56
VIT_07s0104g00540.t01	Wine grape	nucleus	40.69	36.73
TraesCS2A01G391500.1	Wheat	nucleus	45.1	36.65
HORVU2Hr1G093210.7	Barley	nucleus	27.45	36.13
VIT_14s0128g00410.t01	Wine grape	nucleus	35.29	33.8
VIT_15s0021g02680.t01	Wine grape	plastid	37.25	33.19
HORVU1Hr1G055470.2	Barley	plastid	50.49	32.39

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100263322	wikigene:100263322	MapMan:13.1.1.1.7	ProteinID:CBI16684	ProteinID:CBI16684.3
InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	UniProt:D7SM06	EMBL:FN594952	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	EntrezGene:LOC100263322	wikigene:LOC100263322
PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF28	SUPFAM:SSF47954	UniParc:UPI00015C977F
ArrayExpress:VIT_15s0021g01280	EnsemblPlantsGene:VIT_15s0021g01280	EnsemblPlants:VIT_15s0021g01280.t01	unigene:Vvi.20470	RefSeq:XP_002271136	RefSeq:XP_002271136.1
SEG:seg	:	:	:	:	:

Description

Cyclin [Source:UniProtKB/TrEMBL;Acc:D7SM06]

Coordinates

chr15:-:11420869..11422063

Molecular Weight (calculated)

23539.3 Da

IEP (calculated)

7.592

GRAVY (calculated)

-0.117

Length

204 amino acids

Sequence
(BLAST)

001: MAELENPNFM SKLITFLSSI LQRVAESNDL NRRFLPQKIS VFHGLTRPNI SIQSYLERIF NYANCSPSCY VVAYIYLDRF VQKQPSLPIN SYNVHRLLIT
101: GVMVAAKFMD DMYYNNAYYA KVGGISTREM NFLEVDFLFG LAFDLNVTPT TFHTYCCCLQ REMLLQSPLS LPDHHSSLNL ARSSKLHLHF NEDEPSHHKQ
201: QLAA

Best Arabidopsis Sequence Match ( AT2G44740.1 )
(BLAST)

001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV

Arabidopsis Description

CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.