Factsheet for VIT_07s0104g00540.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67205	Soybean	nucleus	72.57	75.58
PGSC0003DMT400033559	Potato	nucleus	67.7	70.51
KRG95527	Soybean	nucleus	73.45	67.48
Solyc09g065200.2.1	Tomato	nucleus	68.58	65.4
Os05t0398000-01	Rice	cytosol	34.96	57.25
GSMUA_AchrUn_...	Banana	nucleus	57.52	54.39
AT3G63120.2	Thale cress	cytosol	49.56	50.68
Bra007729.1-P	Field mustard	cytosol	48.23	49.1
CDY56463	Canola	cytosol	48.23	49.1
CDX76682	Canola	cytosol	47.79	48.87
TraesCS1D01G248800.1	Wheat	nucleus	50.0	48.29
TraesCS1A01G249300.1	Wheat	nucleus	50.88	48.12
TraesCS1B01G260000.1	Wheat	nucleus	50.88	48.12
VIT_14s0128g00410.t01	Wine grape	nucleus	44.69	47.42
EES19489	Sorghum	cytosol	49.12	46.84
Zm00001d038133_P002	Maize	nucleus	48.67	46.61
VIT_16s0013g00630.t01	Wine grape	plasma membrane	39.38	45.88
VIT_12s0059g02480.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	39.82	43.9
VIT_15s0021g01280.t01	Wine grape	nucleus	36.73	40.69
HORVU1Hr1G062210.1	Barley	nucleus, plastid	50.88	37.83
VIT_15s0021g02680.t01	Wine grape	plastid	33.19	32.75

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100254595	wikigene:100254595	MapMan:13.1.1.1.7	ProteinID:CCB56814	ProteinID:CCB56814.1
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	UniProt:F6HQ58	EMBL:FN596005
GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	EntrezGene:LOC100254595
wikigene:LOC100254595	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF40	SUPFAM:SSF47954
TIGR:TC64213	UniParc:UPI0001983848	ArrayExpress:VIT_07s0104g00540	EnsemblPlantsGene:VIT_07s0104g00540	EnsemblPlants:VIT_07s0104g00540.t01	RefSeq:XP_002274682
RefSeq:XP_002274682.1	RefSeq:XP_002274732	RefSeq:XP_002274732.1	SEG:seg	:	:

Description

Cyclin [Source:UniProtKB/TrEMBL;Acc:F6HQ58]

Coordinates

chr7:+:1767023..1769976

Molecular Weight (calculated)

25014.2 Da

IEP (calculated)

6.665

GRAVY (calculated)

0.115

Length

226 amino acids

Sequence
(BLAST)

001: MSQGALTLDM GTLAIDDDIA GSDLYLALGL KELGKGVIGT PRVLLLLSSL LERSVQKNET LLETAQIKDA ITIFHGSRAP TLSVRQYIDR IFKYSGCSPS
101: CFVVAHIYVD RFLQHTDAHL TSLNVHRLLI TSVMVAAKFI DDAFFNNAYY AKVGGVSTAE LNRLEMKFLF SLDFRLQVTV ETFRSYCSQL DKEVAGGLQI
201: ERPFQACGIK ESWSSKEDSC ASTIAR

Best Arabidopsis Sequence Match ( AT3G63120.2 )
(BLAST)

001: MDSLATDPAF IDSDVYLRLG LIIEGKRLKK PPTVLSRLSS SLERSLLLNH DDKILLGSPD SVTVFDGRSP PEISIAHYLD RIFKYSCCSP SCFVIAHIYI
101: DHFLHKTRAL LKPLNVHRLI ITTVMLAAKV FDDRYFNNAY YARVGGVTTR ELNRLEMELL FTLDFKLQVD PQTFHTHCCQ LEKQNRDGFQ IEWPIKEACR
201: ANKETWQKRT PDSLCSQTTA R

Arabidopsis Description

CYCU3-1Cyclin-U3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB60]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.