CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038133_P002	Maize	nucleus	91.98	92.37
Os05t0398000-01	Rice	cytosol	42.62	73.19
TraesCS1D01G248800.1	Wheat	nucleus	71.31	72.22
TraesCS1B01G260000.1	Wheat	nucleus	70.89	70.29
TraesCS1A01G249300.1	Wheat	nucleus	70.46	69.87
HORVU1Hr1G062210.1	Barley	nucleus, plastid	69.62	54.28
GSMUA_AchrUn_...	Banana	nucleus	54.01	53.56
PGSC0003DMT400033559	Potato	nucleus	46.41	50.69
KRH67205	Soybean	nucleus	45.15	49.31
VIT_07s0104g00540.t01	Wine grape	nucleus	46.84	49.12
KRG96839	Soybean	nucleus	34.6	46.59
Solyc09g065200.2.1	Tomato	nucleus	45.57	45.57
KRG95527	Soybean	nucleus	45.15	43.5
AT3G63120.2	Thale cress	cytosol	39.66	42.53
VIT_14s0128g00410.t01	Wine grape	nucleus	36.29	40.38
PGSC0003DMT400081162	Potato	cytosol	16.88	40.0
CDX76682	Canola	cytosol	37.13	39.82
CDY56463	Canola	cytosol	37.13	39.64
Bra007729.1-P	Field mustard	cytosol	37.13	39.64
Solyc01g098930.2.1	Tomato	cytosol	37.55	39.38
PGSC0003DMT400008886	Potato	nucleus	37.55	39.38
CDY27777	Canola	cytosol	34.18	38.21
CDY18791	Canola	nucleus	34.18	37.85
OQU85741	Sorghum	extracellular	23.21	37.41
CDY18769	Canola	nucleus	33.33	37.26
AT3G05327.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	33.33	37.26
EES12591	Sorghum	cytosol	29.96	32.57
EER94473	Sorghum	nucleus	32.49	32.35
OQU82384	Sorghum	nucleus	22.36	24.88
CDY05158	Canola	cytosol, nucleus, peroxisome	31.22	23.27
EES11236	Sorghum	cytosol	21.94	22.22
OQU84271	Sorghum	plastid	33.76	20.57

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	EntrezGene:8076870	UniProt:C5YXL8	InterPro:Cyclin-like_sf	InterPro:Cyclin_PHO80-like
EnsemblPlants:EES19489	ProteinID:EES19489	ProteinID:EES19489.1	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019901	PFAM:PF08613	PANTHER:PTHR15615	PANTHER:PTHR15615:SF40	EnsemblPlantsGene:SORBI_3009G129500
SUPFAM:SSF47954	unigene:Sbi.6548	UniParc:UPI0001A89322	RefSeq:XP_002441059.1	:	:

Description

hypothetical protein

Coordinates

chr9:-:48287069..48289843

Molecular Weight (calculated)

26755.2 Da

IEP (calculated)

5.373

GRAVY (calculated)

0.002

Length

237 amino acids

Sequence
(BLAST)

001: MTMESPTTAA GDELESYLSL GLTVSCSGKD SAEFPKVLLL LSAYLDKKVQ ENEELLDSSK TKESTTIFHG QRVPELSIKL YAERIFKYAK CSPSCFVLGL
101: IYIERYLQQP NIYMTSFSVH RLLIASVVVA AKFIDDAFFN NAYYGRVGGI TTREMNMLEL DLLFSLDFRL KVDIETFGSY CLQLEKEALV LVLERPIQVQ
201: AANVTKHLIC NSSADETCKH ELVRERYSSQ AVHGCSW

Best Arabidopsis Sequence Match ( AT3G63120.2 )
(BLAST)

001: MDSLATDPAF IDSDVYLRLG LIIEGKRLKK PPTVLSRLSS SLERSLLLNH DDKILLGSPD SVTVFDGRSP PEISIAHYLD RIFKYSCCSP SCFVIAHIYI
101: DHFLHKTRAL LKPLNVHRLI ITTVMLAAKV FDDRYFNNAY YARVGGVTTR ELNRLEMELL FTLDFKLQVD PQTFHTHCCQ LEKQNRDGFQ IEWPIKEACR
201: ANKETWQKRT PDSLCSQTTA R

Arabidopsis Description

CYCU3-1Cyclin-U3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB60]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.