CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95527	Soybean	nucleus	96.31	84.96
VIT_07s0104g00540.t01	Wine grape	nucleus	75.58	72.57
PGSC0003DMT400033559	Potato	nucleus	67.74	67.74
Solyc09g065200.2.1	Tomato	nucleus	67.74	62.03
KRG96839	Soybean	nucleus	44.24	54.55
GSMUA_AchrUn_...	Banana	nucleus	58.53	53.14
Os05t0398000-01	Rice	cytosol	33.18	52.17
AT3G63120.2	Thale cress	cytosol	52.07	51.13
KRH71916	Soybean	cytosol	23.04	50.0
Bra007729.1-P	Field mustard	cytosol	49.31	48.2
CDY56463	Canola	cytosol	49.31	48.2
CDX76682	Canola	cytosol	48.85	47.96
TraesCS1D01G248800.1	Wheat	nucleus	49.31	45.73
TraesCS1B01G260000.1	Wheat	nucleus	50.23	45.61
TraesCS1A01G249300.1	Wheat	nucleus	50.23	45.61
KRH40216	Soybean	nucleus	39.17	45.21
EES19489	Sorghum	cytosol	49.31	45.15
Zm00001d038133_P002	Maize	nucleus	48.85	44.92
KRH48888	Soybean	nucleus	39.63	42.57
KRH01000	Soybean	nucleus	39.63	41.95
KRH66451	Soybean	cytosol	39.17	40.67
KRH26828	Soybean	cytosol	41.94	39.22
KRH22528	Soybean	nucleus	41.94	39.22
HORVU1Hr1G062210.1	Barley	nucleus, plastid	49.77	35.53
KRG88936	Soybean	nucleus	35.94	34.98
KRH65411	Soybean	cytosol, nucleus, plastid	34.56	33.48
KRH76137	Soybean	plastid	34.56	33.48
KRH07327	Soybean	endoplasmic reticulum, extracellular	22.58	32.45

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100805926	MapMan:13.1.1.1.7	EMBL:ACUP02002046	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	EnsemblPlantsGene:GLYMA_03G153800	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019901	UniProt:I1JNU3	EnsemblPlants:KRH67205	ProteinID:KRH67205	ProteinID:KRH67205.1
ProteinID:KRH67206.1	PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF40	SUPFAM:SSF47954
UniParc:UPI00023C2101	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:36886568..36891068

Molecular Weight (calculated)

24568.7 Da

IEP (calculated)

7.885

GRAVY (calculated)

0.006

Length

217 amino acids

Sequence
(BLAST)

001: MASLALETED VISDIYLSLG LKESDKGVGV PRVLSLLSSL LERSVQRNET LLEAKHVKDV VTVFHGLRAP TLSVRKYIDR IFKYSGCSPS CFVVAHIYVD
101: RFIQHTEIKL TSLNVHRLLI TSIMLAAKFI DDAFYNNAYY AKVGGVSTSE LNRLEMSFLF GIDFRLQFSV DTFGRYCRQL EKEAAEVVQI ERPMQACRIK
201: ESWSNKDDPT CASTIAR

Best Arabidopsis Sequence Match ( AT3G63120.2 )
(BLAST)

001: MDSLATDPAF IDSDVYLRLG LIIEGKRLKK PPTVLSRLSS SLERSLLLNH DDKILLGSPD SVTVFDGRSP PEISIAHYLD RIFKYSCCSP SCFVIAHIYI
101: DHFLHKTRAL LKPLNVHRLI ITTVMLAAKV FDDRYFNNAY YARVGGVTTR ELNRLEMELL FTLDFKLQVD PQTFHTHCCQ LEKQNRDGFQ IEWPIKEACR
201: ANKETWQKRT PDSLCSQTTA R

Arabidopsis Description

CYCU3-1Cyclin-U3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB60]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.