CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71916	Soybean	cytosol	27.27	48.0
Os05t0398000-01	Rice	cytosol	36.36	46.38
KRH67205	Soybean	nucleus	54.55	44.24
AT3G05327.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	50.0	41.51
KRH40216	Soybean	nucleus	44.32	41.49
CDY18769	Canola	nucleus	49.43	41.04
CDY18791	Canola	nucleus	49.43	40.65
Solyc01g098930.2.1	Tomato	cytosol	51.7	40.27
PGSC0003DMT400008886	Potato	nucleus	51.7	40.27
CDY27777	Canola	cytosol	47.73	39.62
KRH48888	Soybean	nucleus	45.45	39.6
KRG95527	Soybean	nucleus	54.55	39.02
GSMUA_AchrUn_...	Banana	nucleus	52.84	38.91
VIT_14s0128g00410.t01	Wine grape	nucleus	46.59	38.5
KRH01000	Soybean	nucleus	43.75	37.56
KRH66451	Soybean	cytosol	43.75	36.84
TraesCS1D01G248800.1	Wheat	nucleus	48.86	36.75
Zm00001d038133_P002	Maize	nucleus	48.86	36.44
TraesCS1A01G249300.1	Wheat	nucleus	48.86	35.98
TraesCS1B01G260000.1	Wheat	nucleus	48.86	35.98
EES19489	Sorghum	cytosol	46.59	34.6
PGSC0003DMT400081162	Potato	cytosol	19.32	34.0
KRH26828	Soybean	cytosol	43.75	33.19
KRH22528	Soybean	nucleus	43.75	33.19
KRH07327	Soybean	endoplasmic reticulum, extracellular	27.84	32.45
KRG88936	Soybean	nucleus	36.36	28.7
HORVU1Hr1G062210.1	Barley	nucleus, plastid	49.43	28.62
KRH65411	Soybean	cytosol, nucleus, plastid	35.8	28.12
KRH76137	Soybean	plastid	35.8	28.12
CDY05158	Canola	cytosol, nucleus, peroxisome	45.45	25.16

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100810215	MapMan:13.1.1.1.7	EMBL:ACUP02012166	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	EnsemblPlantsGene:GLYMA_19G235700	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019901	UniProt:K7MZY5	EnsemblPlants:KRG96839	ProteinID:KRG96839	ProteinID:KRG96839.1
PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF40	SUPFAM:SSF47954	UniParc:UPI000233EA10
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:48514921..48515931

Molecular Weight (calculated)

20235.7 Da

IEP (calculated)

9.593

GRAVY (calculated)

-0.136

Length

176 amino acids

Sequence
(BLAST)

001: MAIKSETYKS LELGAPSKSH ASGTPLVLLN LSSNWERSIL KNEKLLLTTR KKNDPVTIFH GSKAPNLSVT HYMERILKYS HCSPSCFVIA QIYMDRFFQK
101: KGGYLTSFNA HRLLITSVMV AVKFLDDKYY SNAYYAKVGG VSTEEMNRME LEFLFNLEFR LFVTTELFLK YCEKLG

Best Arabidopsis Sequence Match ( AT3G05327.1 )
(BLAST)

001: METSRNSTNS SLFQWLGLLE DSDQPPDSTP PRVITLLAST LEKMIQKNKK KFHTRHNKAD EITMFHGSKA PSLSIYRYTE RIHRYAQCSP VCFVAAFAYI
101: LRYLQRPEAT STARRLTSLN VHRLLITSLL VAAKFLERQC YNNAYYAKIG GVSTEEMNRL ERTFLVDVDF RLYITTETFE KHCLMLQKET VPCDSRKLRT
201: VLGEIACSCQ AI

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:Q1G3M7]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.