Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27777 | Canola | cytosol | 80.19 | 80.19 |
| CDY18769 | Canola | nucleus | 78.77 | 78.77 |
| CDY18791 | Canola | nucleus | 78.3 | 77.57 |
| KRG96839 | Soybean | nucleus | 41.51 | 50.0 |
| CDY05158 | Canola | cytosol, nucleus, peroxisome | 71.7 | 47.8 |
| VIT_14s0128g00410.t01 | Wine grape | nucleus | 42.92 | 42.72 |
| Os05t0398000-01 | Rice | cytosol | 26.42 | 40.58 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.28 | 40.17 |
| PGSC0003DMT400008886 | Potato | nucleus | 40.09 | 37.61 |
| Solyc01g098930.2.1 | Tomato | cytosol | 39.15 | 36.73 |
| AT2G44740.1 | Thale cress | cytosol | 34.91 | 36.63 |
| TraesCS1B01G260000.1 | Wheat | nucleus | 39.62 | 35.15 |
| TraesCS1D01G248800.1 | Wheat | nucleus | 38.68 | 35.04 |
| Zm00001d038133_P002 | Maize | nucleus | 38.68 | 34.75 |
| TraesCS1A01G249300.1 | Wheat | nucleus | 38.68 | 34.31 |
| PGSC0003DMT400081162 | Potato | cytosol | 16.04 | 34.0 |
| AT3G63120.2 | Thale cress | cytosol | 35.38 | 33.94 |
| EES19489 | Sorghum | cytosol | 37.26 | 33.33 |
| AT5G07450.1 | Thale cress | nucleus | 32.08 | 31.48 |
| AT3G21870.1 | Thale cress | cytosol | 31.13 | 31.43 |
| AT5G61650.1 | Thale cress | nucleus | 31.13 | 30.14 |
| AT2G45080.1 | Thale cress | cytosol | 29.25 | 27.93 |
| HORVU1Hr1G062210.1 | Barley | nucleus, plastid | 38.68 | 26.97 |
| AT3G60550.1 | Thale cress | mitochondrion, nucleus, plastid | 28.77 | 26.52 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | EntrezGene:3768801 | UniProt:A0A178VKD6 | ProteinID:AEE74220.1 | ArrayExpress:AT3G05327 |
| EnsemblPlantsGene:AT3G05327 | RefSeq:AT3G05327 | TAIR:AT3G05327 | RefSeq:AT3G05327-TAIR-G | EnsemblPlants:AT3G05327.1 | TAIR:AT3G05327.1 |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | EMBL:DQ487557 | GO:GO:0000079 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | RefSeq:NP_001030642.1 | ProteinID:OAP05735.1 | PFAM:PF08613 |
| PIRSF:PIRSF027110 | PO:PO:0000293 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF40 | UniProt:Q1G3M7 | SUPFAM:SSF47954 |
| UniParc:UPI00005DBE87 | : | : | : | : | : |
Description
Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:Q1G3M7]
Coordinates
chr3:-:1517409..1518599
Molecular Weight (calculated)
24425.5 Da
IEP (calculated)
9.213
GRAVY (calculated)
-0.304
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: METSRNSTNS SLFQWLGLLE DSDQPPDSTP PRVITLLAST LEKMIQKNKK KFHTRHNKAD EITMFHGSKA PSLSIYRYTE RIHRYAQCSP VCFVAAFAYI
101: LRYLQRPEAT STARRLTSLN VHRLLITSLL VAAKFLERQC YNNAYYAKIG GVSTEEMNRL ERTFLVDVDF RLYITTETFE KHCLMLQKET VPCDSRKLRT
201: VLGEIACSCQ AI
101: LRYLQRPEAT STARRLTSLN VHRLLITSLL VAAKFLERQC YNNAYYAKIG GVSTEEMNRL ERTFLVDVDF RLYITTETFE KHCLMLQKET VPCDSRKLRT
201: VLGEIACSCQ AI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.