Factsheet for Solyc01g098930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008886	Potato	nucleus	95.13	95.13
PGSC0003DMT400081162	Potato	cytosol	41.59	94.0
KRG96839	Soybean	nucleus	40.27	51.7
Solyc09g065200.2.1	Tomato	nucleus	49.12	46.84
Os05t0398000-01	Rice	cytosol	27.88	45.65
GSMUA_AchrUn_...	Banana	nucleus	46.02	43.51
VIT_14s0128g00410.t01	Wine grape	nucleus	39.38	41.78
Solyc03g093790.2.1	Tomato	nucleus	34.96	40.31
CDY18791	Canola	nucleus	37.17	39.25
AT3G05327.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	36.73	39.15
CDY18769	Canola	nucleus	36.73	39.15
Solyc01g089850.2.1	Tomato	nucleus	35.4	38.84
TraesCS1D01G248800.1	Wheat	nucleus	39.82	38.46
CDY27777	Canola	cytosol	35.84	38.21
Zm00001d038133_P002	Maize	nucleus	39.82	38.14
TraesCS1B01G260000.1	Wheat	nucleus	40.27	38.08
TraesCS1A01G249300.1	Wheat	nucleus	39.82	37.66
EES19489	Sorghum	cytosol	39.38	37.55
Solyc07g052610.2.1	Tomato	cytosol	34.07	31.95
Solyc01g090800.2.1	Tomato	cytosol	30.97	31.82
HORVU1Hr1G062210.1	Barley	nucleus, plastid	40.27	29.93
CDY05158	Canola	cytosol, nucleus, peroxisome	34.51	24.53

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_PHO80-like	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	UniProt:K4B0T0	PFAM:PF08613
PANTHER:PTHR15615	PANTHER:PTHR15615:SF40	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc01g098930.2	EnsemblPlants:Solyc01g098930.2.1	UniParc:UPI000276899D

Description

No Description!

Coordinates

chr1:-:89301271..89302323

Molecular Weight (calculated)

25436.8 Da

IEP (calculated)

9.441

GRAVY (calculated)

-0.114

Length

226 amino acids

Sequence
(BLAST)

001: MIMGAEGFGT KSGISKTYTN MGLNEYDRGD KGNPKILWIV ASVIERSVQK NEKGLKGSNK RGVVTVFHGT RAPVLTVQQY IERIFKYSNC SPSCFVVAYI
101: YLERFLNLTD CLLTSLNVHR LLITSIMLAV KFVDDDCYNN AYYAKVGGIT TRELNKLEVK FLAALDFRLH VSVESFDKYC LQLEKDSNEK LQIDRPIRIF
201: AWGKGLVNKN ISNGSPTVGG YSCRAF

Best Arabidopsis Sequence Match ( AT3G05327.1 )
(BLAST)

001: METSRNSTNS SLFQWLGLLE DSDQPPDSTP PRVITLLAST LEKMIQKNKK KFHTRHNKAD EITMFHGSKA PSLSIYRYTE RIHRYAQCSP VCFVAAFAYI
101: LRYLQRPEAT STARRLTSLN VHRLLITSLL VAAKFLERQC YNNAYYAKIG GVSTEEMNRL ERTFLVDVDF RLYITTETFE KHCLMLQKET VPCDSRKLRT
201: VLGEIACSCQ AI

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:Q1G3M7]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.