Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc08g066330.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45080.1 | Solyc08g066330.1.1 | AT3G48750.1 | 15197472 |
| AT3G60550.1 | Solyc08g066330.1.1 | AT3G48750.1 | 15197472 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400066949 | Potato | nucleus | 97.27 | 97.27 |
| KRH76137 | Soybean | plastid | 80.45 | 79.02 |
| KRH65411 | Soybean | cytosol, nucleus, plastid | 80.0 | 78.57 |
| VIT_15s0021g02680.t01 | Wine grape | plastid | 81.36 | 78.17 |
| KRG88936 | Soybean | nucleus | 77.27 | 76.23 |
| Bra004888.1-P | Field mustard | mitochondrion, plastid | 74.09 | 73.42 |
| CDX74709 | Canola | mitochondrion, plastid | 74.09 | 73.42 |
| CDY18953 | Canola | mitochondrion, plastid | 73.64 | 72.97 |
| AT2G45080.1 | Thale cress | cytosol | 73.18 | 72.52 |
| Bra000369.1-P | Field mustard | plastid | 73.64 | 72.32 |
| CDX95626 | Canola | mitochondrion, plastid | 73.18 | 71.88 |
| CDX83405 | Canola | mitochondrion, plastid | 73.18 | 71.88 |
| AT3G60550.1 | Thale cress | mitochondrion, nucleus, plastid | 72.27 | 69.13 |
| Bra003420.1-P | Field mustard | cytosol | 67.73 | 67.73 |
| CDY41156 | Canola | plastid | 71.36 | 67.38 |
| Bra007544.1-P | Field mustard | plastid | 71.36 | 67.38 |
| CDX67834 | Canola | cytosol | 69.55 | 66.23 |
| CDX71800 | Canola | plastid | 70.45 | 65.96 |
| CDX98427 | Canola | cytosol | 67.73 | 64.22 |
| GSMUA_Achr4P24630_001 | Banana | nucleus | 58.18 | 55.17 |
| Os04t0552300-01 | Rice | cytosol | 46.36 | 47.0 |
| Zm00001d002733_P001 | Maize | cytosol | 45.45 | 42.19 |
| TraesCS2A01G413300.1 | Wheat | cytosol | 42.73 | 40.69 |
| EES11236 | Sorghum | cytosol | 43.18 | 40.6 |
| TraesCS2B01G432000.1 | Wheat | cytosol | 42.73 | 40.52 |
| TraesCS2D01G411300.1 | Wheat | cytosol | 42.73 | 40.52 |
| Solyc01g089850.2.1 | Tomato | nucleus | 32.73 | 34.95 |
| Solyc03g093790.2.1 | Tomato | nucleus | 30.91 | 34.69 |
| Solyc09g065200.2.1 | Tomato | nucleus | 35.45 | 32.91 |
| Solyc01g098930.2.1 | Tomato | cytosol | 31.82 | 30.97 |
| Solyc07g052610.2.1 | Tomato | cytosol | 33.18 | 30.29 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | UniProt:K4AZ21 | PFAM:PF08613 |
| PIRSF:PIRSF027110 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF15 | SUPFAM:SSF47954 | EnsemblPlantsGene:Solyc01g090800.2 | EnsemblPlants:Solyc01g090800.2.1 |
| UniParc:UPI0002767E1B | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:84508667..84509784
Molecular Weight (calculated)
25874.3 Da
IEP (calculated)
8.303
GRAVY (calculated)
-0.207
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MANISPRKLR DDLYCYSYEQ DSNIPLVISV LASLIERNLA RNERIAKNCT WALSKNVRTR VFDCHETPDM TIQSYLERIF RYTRAGPSVY VVAYVYIDRF
101: CQLYPHFRIS PRNVHRLLIT TIMVASKYVE DMNYRNSYFA RVGGLTTNEM NKLEMEFVFM MGFKFHVNVS VFESYCCHLE REVSIGGGYE IERTLRCAEE
201: IKSKQIEERS CCSQITRVLL
101: CQLYPHFRIS PRNVHRLLIT TIMVASKYVE DMNYRNSYFA RVGGLTTNEM NKLEMEFVFM MGFKFHVNVS VFESYCCHLE REVSIGGGYE IERTLRCAEE
201: IKSKQIEERS CCSQITRVLL
001: MAVSNSLTIS PRKLRSDLYS YSYQNNSKTP LVISVLSSLI DRTLTRNERI SRRALPSSGA GGKTQIFDCR EIPDMTIQSY LGRIFRYTKA GPSVYVVAYV
101: YIDRFCQTNP GFRISLTNVH RLLITTIMIA SKYVEDLNYR NSYFAKVGGL ETEDLNKLEL EFLFLMGFKL HVNVSVFESY CCHLEREVSF GGGYQIEKAL
201: RCAEEIKSRQ MIIQDPKHHH HHHQLARILL
101: YIDRFCQTNP GFRISLTNVH RLLITTIMIA SKYVEDLNYR NSYFAKVGGL ETEDLNKLEL EFLFLMGFKL HVNVSVFESY CCHLEREVSF GGGYQIEKAL
201: RCAEEIKSRQ MIIQDPKHHH HHHQLARILL
Arabidopsis Description
CYCU2-2Cyclin-U2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M205]
SUBAcon: [plastid,nucleus,mitochondrion]
SUBAcon: [plastid,nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.