CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX83047
CDX87018
CDY05870
CDY66197
CDY67496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45080.1	CDX68497	AT3G48750.1	15197472
AT2G45080.1	CDX83047	AT3G48750.1	15197472
AT2G45080.1	CDX87018	AT3G48750.1	15197472
AT2G45080.1	CDY05870	AT3G48750.1	15197472
AT2G45080.1	CDY66197	AT3G48750.1	15197472
AT2G45080.1	CDY67496	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004888.1-P	Field mustard	mitochondrion, plastid	99.1	99.1
CDX74709	Canola	mitochondrion, plastid	99.1	99.1
AT2G45080.1	Thale cress	cytosol	94.14	94.14
CDX95626	Canola	mitochondrion, plastid	90.99	90.18
CDX83405	Canola	mitochondrion, plastid	90.99	90.18
CDX67834	Canola	cytosol	86.04	82.68
CDY41156	Canola	plastid	86.04	81.97
CDX98427	Canola	cytosol	85.14	81.47
CDX71800	Canola	plastid	86.04	81.28
PGSC0003DMT400066949	Potato	nucleus	73.87	74.55
VIT_15s0021g02680.t01	Wine grape	plastid	76.58	74.24
KRH76137	Soybean	plastid	74.32	73.66
Solyc01g090800.2.1	Tomato	cytosol	72.97	73.64
KRG88936	Soybean	nucleus	73.87	73.54
KRH65411	Soybean	cytosol, nucleus, plastid	72.07	71.43
GSMUA_Achr4P24630_001	Banana	nucleus	59.01	56.47
Os04t0552300-01	Rice	cytosol	48.65	49.77
TraesCS2A01G413300.1	Wheat	cytosol	45.5	43.72
TraesCS2D01G411300.1	Wheat	cytosol	45.05	43.1
TraesCS2B01G432000.1	Wheat	cytosol	45.05	43.1
Zm00001d002733_P001	Maize	cytosol	45.05	42.19
EES11236	Sorghum	cytosol	44.14	41.88
CDY64256	Canola	cytosol	16.22	40.91
CDY30482	Canola	cytosol	35.59	39.3
CDY23452	Canola	cytosol	35.59	39.3
CDY48257	Canola	cytosol	35.14	39.2
CDX95612	Canola	cytosol	33.78	37.88
CDY55656	Canola	cytosol	16.22	37.5
CDX83419	Canola	cytosol	33.78	37.5
CDX74684	Canola	cytosol	36.49	35.84
CDY38647	Canola	cytosol	31.98	33.81
CDY54190	Canola	cytosol	31.98	33.81
CDX70040	Canola	nucleus	32.43	33.33
CDY56463	Canola	cytosol	32.88	32.88
CDY02124	Canola	nucleus	16.67	32.74
CDX76682	Canola	cytosol	32.43	32.58
CDY65234	Canola	nucleus	31.08	31.94
CDY18791	Canola	nucleus	30.63	31.78
CDY08862	Canola	cytosol	29.28	30.81
CDY18769	Canola	nucleus	29.28	30.66
CDY27777	Canola	cytosol	28.38	29.72
CDY02123	Canola	mitochondrion	13.51	27.52
CDY05158	Canola	cytosol, nucleus, peroxisome	26.58	18.55

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	GO:A0A078G2R8	UniProt:A0A078G2R8	EnsemblPlants:CDY18953	ProteinID:CDY18953
ProteinID:CDY18953.1	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	GO:GO:0000079	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	EnsemblPlantsGene:GSBRNA2T00006172001	PFAM:PF08613	PIRSF:PIRSF027110
PANTHER:PTHR15615	PANTHER:PTHR15615:SF15	SUPFAM:SSF47954	UniParc:UPI0004EE6D75	SEG:seg	:

Description

BnaC04g03970DBnaC04g03970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2R8]

Coordinates

chrLK032090:-:631635..632747

Molecular Weight (calculated)

25528.7 Da

IEP (calculated)

8.435

GRAVY (calculated)

-0.149

Length

222 amino acids

Sequence
(BLAST)

001: MASSNTLAIS PRKLRSDLYS YSYQDGSSTP LVISVLSSLI ERTLARNERI SRSYGGFGKT RVFDCLEIPD MTIQSYLERI FRYTKAGPSV YVVAYVYIDR
101: FCQSNQGFRI SLTNVHRLLI TTIMVASKYV EDMNYKNSYF AKVGGLETED LNNLELEFLF LMGFKLHVNV SVFESYCCHL EREVSIGGGY QIEKALRCAE
201: EIKSRQIVQD PKHHNQFSRI FL

Best Arabidopsis Sequence Match ( AT2G45080.1 )
(BLAST)

001: MDSLAISPRK LRSDLYSYSY QDDSNTVPLV ISVLSSLIER TLARNERISR SYGGFGKTRV FDCREIPDMT IQSYLERIFR YTKAGPSVYV VAYVYIDRFC
101: QNNQGFRISL TNVHRLLITT IMIASKYVED MNYKNSYFAK VGGLETEDLN NLELEFLFLM GFKLHVNVSV FESYCCHLER EVSIGGGYQI EKALRCAEEI
201: KSRQIVQDPK HHHHHQFSRI ML

Arabidopsis Description

CYCU2-1Cycp3 [Source:UniProtKB/TrEMBL;Acc:A0A178VTM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.