CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX83047
CDX87018
CDY05870
CDY66197
CDY67496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61650.1	CDX68497	AT3G48750.1	15197472
AT5G61650.1	CDX83047	AT3G48750.1	15197472
AT5G61650.1	CDX87018	AT3G48750.1	15197472
AT5G61650.1	CDY05870	AT3G48750.1	15197472
AT5G61650.1	CDY66197	AT3G48750.1	15197472
AT5G61650.1	CDY67496	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08862	Canola	cytosol	78.9	40.76
AT5G61650.1	Thale cress	nucleus	64.22	31.96
CDX70040	Canola	nucleus	50.46	25.46
CDY65234	Canola	nucleus	48.62	24.54
HORVU2Hr1G093210.7	Barley	nucleus	33.03	23.23
OQU85741	Sorghum	extracellular	28.44	21.09
KRH01000	Soybean	nucleus	39.45	20.98
CDX95612	Canola	cytosol	37.61	20.71
CDY48257	Canola	cytosol	37.61	20.6
CDX83419	Canola	cytosol	37.61	20.5
CDY30482	Canola	cytosol	37.61	20.4
CDY23452	Canola	cytosol	37.61	20.4
KRH40216	Soybean	nucleus	33.95	19.68
VIT_16s0013g00630.t01	Wine grape	plasma membrane	34.86	19.59
Solyc03g093790.2.1	Tomato	nucleus	33.95	18.88
PGSC0003DMT400080410	Potato	nucleus	34.86	18.72
GSMUA_Achr2P10440_001	Banana	cytosol	33.03	18.27
Os04t0544200-01	Rice	nucleus	34.86	17.92
CDX74684	Canola	cytosol	35.78	17.26
EES12591	Sorghum	cytosol	33.95	16.97
TraesCS6B01G282600.1	Wheat	cytosol	32.11	16.83
TraesCS6D01G223800.1	Wheat	cytosol	32.11	16.83
Zm00001d017441_P001	Maize	cytosol	32.11	16.75
HORVU6Hr1G061870.1	Barley	cytosol	32.11	16.67
Os10t0563900-01	Rice	nucleus	32.11	16.51
TraesCS6A01G241800.1	Wheat	nucleus	32.11	16.51
Os02t0652000-01	Rice	cytosol	32.11	16.51
TraesCS2B01G410000.1	Wheat	nucleus	33.03	16.44
Zm00001d002788_P001	Maize	cytosol	30.28	15.94
TraesCS2D01G389800.1	Wheat	nucleus	32.11	15.84
GSMUA_Achr1P00510_001	Banana	nucleus	28.44	15.12
GSMUA_Achr5P12540_001	Banana	cytosol, nucleus, plastid	28.44	15.05
Zm00001d029970_P001	Maize	nucleus	30.28	14.6
TraesCS1D01G218800.1	Wheat	nucleus	32.11	14.52
TraesCS1A01G217000.1	Wheat	cytosol	32.11	14.4
TraesCS2A01G391500.1	Wheat	nucleus	33.03	14.34
EER94473	Sorghum	nucleus	31.19	14.29
TraesCS1B01G230100.1	Wheat	nucleus	32.11	14.23
CDY55656	Canola	cytosol	11.93	13.54
CDX74709	Canola	mitochondrion, plastid	27.52	13.51
CDY18953	Canola	mitochondrion, plastid	27.52	13.51
CDX67834	Canola	cytosol	26.61	12.55
CDX83405	Canola	mitochondrion, plastid	25.69	12.5
CDX95626	Canola	mitochondrion, plastid	25.69	12.5
CDX98427	Canola	cytosol	26.61	12.5
CDY41156	Canola	plastid	26.61	12.45
CDX71800	Canola	plastid	26.61	12.34
CDY64256	Canola	cytosol	9.17	11.36
CDY27777	Canola	cytosol	22.02	11.32
HORVU1Hr1G055470.2	Barley	plastid	32.11	11.01
CDY18769	Canola	nucleus	21.1	10.85
CDY18791	Canola	nucleus	21.1	10.75
CDX76682	Canola	cytosol	20.18	9.95
CDY38647	Canola	cytosol	18.35	9.52
CDY54190	Canola	cytosol	18.35	9.52
CDY56463	Canola	cytosol	19.27	9.46
CDY05158	Canola	cytosol, nucleus, peroxisome	22.02	7.55
CDY02124	Canola	nucleus	6.42	6.19
Bra012933.1-P	Field mustard	nucleus	6.42	6.19

Protein Annotations

EnsemblPlants:CDY02123	EnsemblPlantsGene:GSBRNA2T00113515001	PANTHER:PTHR15615	PANTHER:PTHR15615:SF28	ProteinID:CDY02123	ProteinID:CDY02123.1
UniParc:UPI0004EE2082	MapMan:35.1	:	:	:	:

Description

BnaA03g40440D

Coordinates

chrLK031932:-:254595..257269

Molecular Weight (calculated)

12786.7 Da

IEP (calculated)

10.556

GRAVY (calculated)

-0.134

Length

109 amino acids

Sequence
(BLAST)

001: MAIAVVKARL VLQQRILRSR WRNKQKEEMN MLELDFLFGV GFQLNVTIST FNNYCSFLRR EMVRLTNMNS LFVEPSLSFR SSFETKLVMN TLEEDSLITH
101: HNKKQLAAA

Best Arabidopsis Sequence Match ( AT5G61650.1 )
(BLAST)

001: MADQIEIQRM NQDLQEPLAE IMPSVLTAMS YLLQRVSETN DNLSQKQKPS SFTGVTKPSI SIRSYLERIF EYANCSYSCY IVAYIYLDRF VKKQPFLPIN
101: SFNVHRLIIT SVLVSAKFMD DLSYNNEYYA KVGGISREEM NMLELDFLFG IGFELNVTVS TFNNYCCFLQ REMAMLMKMK SLFLEPSSFK ISSKTKLVMY
201: PHEEDSLSTH HNKKQLAAA

Arabidopsis Description

CYCU4-3Cyclin-U4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKF6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.