Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY48257 | Canola | cytosol | 78.32 | 88.94 |
Bra004863.1-P | Field mustard | nucleus | 84.51 | 86.04 |
CDY30482 | Canola | cytosol | 76.11 | 85.57 |
CDY23452 | Canola | cytosol | 76.11 | 85.57 |
CDX83419 | Canola | cytosol | 75.22 | 85.0 |
CDX95612 | Canola | cytosol | 74.34 | 84.85 |
AT2G44740.1 | Thale cress | cytosol | 74.34 | 83.17 |
KRH71916 | Soybean | cytosol | 34.51 | 78.0 |
KRH48888 | Soybean | nucleus | 60.62 | 67.82 |
KRH66451 | Soybean | cytosol | 59.29 | 64.11 |
CDY02124 | Canola | nucleus | 30.09 | 60.18 |
GSMUA_Achr2P10440_001 | Banana | cytosol | 45.58 | 52.28 |
KRH07327 | Soybean | endoplasmic reticulum, extracellular | 34.51 | 51.66 |
CDY08862 | Canola | cytosol | 47.35 | 50.71 |
CDX70040 | Canola | nucleus | 47.35 | 49.54 |
CDY65234 | Canola | nucleus | 46.9 | 49.07 |
Os10t0563900-01 | Rice | nucleus | 43.36 | 46.23 |
GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 42.04 | 46.12 |
GSMUA_Achr1P00510_001 | Banana | nucleus | 41.59 | 45.85 |
OQU85741 | Sorghum | extracellular | 29.65 | 45.58 |
Zm00001d029970_P001 | Maize | nucleus | 42.48 | 42.48 |
HORVU6Hr1G061870.1 | Barley | cytosol | 38.94 | 41.9 |
TraesCS6D01G223800.1 | Wheat | cytosol | 38.5 | 41.83 |
TraesCS6B01G282600.1 | Wheat | cytosol | 38.05 | 41.35 |
TraesCS1D01G218800.1 | Wheat | nucleus | 43.81 | 41.08 |
Zm00001d002788_P001 | Maize | cytosol | 37.61 | 41.06 |
Os04t0544200-01 | Rice | nucleus | 38.5 | 41.04 |
TraesCS1A01G217000.1 | Wheat | cytosol | 43.81 | 40.74 |
TraesCS2D01G389800.1 | Wheat | nucleus | 39.82 | 40.72 |
TraesCS1B01G230100.1 | Wheat | nucleus | 44.25 | 40.65 |
TraesCS2B01G410000.1 | Wheat | nucleus | 39.38 | 40.64 |
CDY55656 | Canola | cytosol | 17.26 | 40.62 |
TraesCS6A01G241800.1 | Wheat | nucleus | 38.05 | 40.57 |
Os02t0652000-01 | Rice | cytosol | 38.05 | 40.57 |
EER94473 | Sorghum | nucleus | 42.48 | 40.34 |
Zm00001d017441_P001 | Maize | cytosol | 37.17 | 40.19 |
EES12591 | Sorghum | cytosol | 38.5 | 39.91 |
CDX76682 | Canola | cytosol | 37.61 | 38.46 |
CDY56463 | Canola | cytosol | 37.61 | 38.29 |
CDY64256 | Canola | cytosol | 14.6 | 37.5 |
CDY18953 | Canola | mitochondrion, plastid | 35.84 | 36.49 |
CDX74709 | Canola | mitochondrion, plastid | 35.84 | 36.49 |
CDY02123 | Canola | mitochondrion | 17.26 | 35.78 |
CDY38647 | Canola | cytosol | 33.19 | 35.71 |
TraesCS2A01G391500.1 | Wheat | nucleus | 39.38 | 35.46 |
CDY54190 | Canola | cytosol | 32.74 | 35.24 |
CDY18769 | Canola | nucleus | 32.74 | 34.91 |
HORVU2Hr1G093210.7 | Barley | nucleus | 23.89 | 34.84 |
CDY18791 | Canola | nucleus | 32.74 | 34.58 |
CDX83405 | Canola | mitochondrion, plastid | 33.63 | 33.93 |
CDX95626 | Canola | mitochondrion, plastid | 33.63 | 33.93 |
CDY41156 | Canola | plastid | 34.51 | 33.48 |
CDY27777 | Canola | cytosol | 30.97 | 33.02 |
CDX67834 | Canola | cytosol | 33.63 | 32.9 |
CDX71800 | Canola | plastid | 34.07 | 32.77 |
CDX98427 | Canola | cytosol | 33.19 | 32.33 |
HORVU1Hr1G055470.2 | Barley | plastid | 44.25 | 31.45 |
CDY05158 | Canola | cytosol, nucleus, peroxisome | 32.3 | 22.96 |
Protein Annotations
Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | GO:A0A078CEX2 | EnsemblPlants:CDX74684 | ProteinID:CDX74684 | ProteinID:CDX74684.1 |
InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:GSBRNA2T00116636001 | PFAM:PF08613 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 |
PANTHER:PTHR15615:SF28 | SUPFAM:SSF47954 | UniParc:UPI0004EEE4A2 | SEG:seg | : | : |
Description
BnaA05g04300D
Coordinates
chrLK031802:-:144835..146357
Molecular Weight (calculated)
25739.1 Da
IEP (calculated)
9.013
GRAVY (calculated)
0.036
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELENPGVM PKLISFLSSL LERVSETNDL IRRVTTQSQS VSVFEGLSRP PITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVSAKF LDDRYYNNAY YAKVGGISTK EMNLLELDFL FGLGFDLNVT PNTFHAYFSY LKKEMTLLQP LSLVLVPSRP VNLSLPSTTK KLLISNNNNN
201: SLFDFKNVFF LSCSVEISRQ GHSYLS
101: ITSVMVSAKF LDDRYYNNAY YAKVGGISTK EMNLLELDFL FGLGFDLNVT PNTFHAYFSY LKKEMTLLQP LSLVLVPSRP VNLSLPSTTK KLLISNNNNN
201: SLFDFKNVFF LSCSVEISRQ GHSYLS
001: MDSLATDPAF IDSDVYLRLG LIIEGKRLKK PPTVLSRLSS SLERSLLLNH DDKILLGSPD SVTVFDGRSP PEISIAHYLD RIFKYSCCSP SCFVIAHIYI
101: DHFLHKTRAL LKPLNVHRLI ITTVMLAAKV FDDRYFNNAY YARVGGVTTR ELNRLEMELL FTLDFKLQVD PQTFHTHCCQ LEKQNRDGFQ IEWPIKEACR
201: ANKETWQKRT PDSLCSQTTA R
101: DHFLHKTRAL LKPLNVHRLI ITTVMLAAKV FDDRYFNNAY YARVGGVTTR ELNRLEMELL FTLDFKLQVD PQTFHTHCCQ LEKQNRDGFQ IEWPIKEACR
201: ANKETWQKRT PDSLCSQTTA R
Arabidopsis Description
CYCU3-1Cyclin-U3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB60]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.