Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0123100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G44740.1 | Os02t0123100-01 | AT3G48750.1 | 15197472 |
| AT5G07450.1 | Os02t0123100-01 | AT3G48750.1 | 15197472 |
| AT5G61650.1 | Os02t0123100-01 | AT3G48750.1 | 15197472 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G389800.1 | Wheat | nucleus | 79.72 | 76.47 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 78.77 | 76.26 |
| Zm00001d002788_P001 | Maize | cytosol | 72.64 | 74.4 |
| EES12591 | Sorghum | cytosol | 76.42 | 74.31 |
| Os02t0652000-01 | Rice | cytosol | 71.7 | 71.7 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 79.25 | 66.93 |
| Os10t0563900-01 | Rice | nucleus | 59.91 | 59.91 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 55.19 | 56.8 |
| KRH40216 | Soybean | nucleus | 41.04 | 46.28 |
| KRH71916 | Soybean | cytosol | 21.7 | 46.0 |
| CDX95612 | Canola | cytosol | 42.92 | 45.96 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 43.87 | 45.59 |
| PGSC0003DMT400080410 | Potato | nucleus | 43.4 | 45.32 |
| Bra000361.1-P | Field mustard | cytosol | 42.45 | 45.23 |
| KRH48888 | Soybean | nucleus | 42.92 | 45.05 |
| CDX83419 | Canola | cytosol | 42.45 | 45.0 |
| Solyc03g093790.2.1 | Tomato | nucleus | 41.51 | 44.9 |
| CDY48257 | Canola | cytosol | 41.98 | 44.72 |
| Solyc01g089850.2.1 | Tomato | nucleus | 43.4 | 44.66 |
| KRH01000 | Soybean | nucleus | 42.92 | 44.39 |
| CDY30482 | Canola | cytosol | 41.98 | 44.28 |
| CDY23452 | Canola | cytosol | 41.98 | 44.28 |
| Bra037638.1-P | Field mustard | cytosol | 41.98 | 44.28 |
| AT2G44740.1 | Thale cress | cytosol | 41.98 | 44.06 |
| PGSC0003DMT400080046 | Potato | nucleus | 42.92 | 43.75 |
| KRH66451 | Soybean | cytosol | 41.98 | 42.58 |
| AT5G61650.1 | Thale cress | nucleus | 43.4 | 42.01 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 38.21 | 41.75 |
| CDY02124 | Canola | nucleus | 22.17 | 41.59 |
| Bra012933.1-P | Field mustard | nucleus | 22.17 | 41.59 |
| CDY08862 | Canola | cytosol | 41.04 | 41.23 |
| CDY65234 | Canola | nucleus | 41.98 | 41.2 |
| Bra009262.1-P | Field mustard | nucleus | 41.98 | 41.2 |
| AT5G07450.1 | Thale cress | nucleus | 41.51 | 40.74 |
| Os02t0125400-01 | Rice | mitochondrion | 48.58 | 40.71 |
| CDX70040 | Canola | nucleus | 41.04 | 40.28 |
| Bra004863.1-P | Field mustard | nucleus | 41.51 | 39.64 |
| CDX74684 | Canola | cytosol | 41.04 | 38.5 |
| Os04t0552300-01 | Rice | cytosol | 38.21 | 37.33 |
| CDY02123 | Canola | mitochondrion | 17.92 | 34.86 |
| Os05t0398000-01 | Rice | cytosol | 19.34 | 29.71 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 20.75 | 29.14 |
| Os04t0628900-00 | Rice | nucleus | 31.6 | 25.38 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | EntrezGene:4336556 | ProteinID:BAF15373.1 | ProteinID:BAS90323.1 | ProteinID:CAE04344.1 |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | ProteinID:EAZ31513.1 | GO:GO:0000079 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 | GO:GO:0019901 |
| EnsemblPlantsGene:Os04g0544200 | EnsemblPlants:Os04t0544200-01 | PFAM:PF08613 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF33 |
| UniProt:Q7XN03 | SUPFAM:SSF47954 | TMHMM:TMhelix | UniParc:UPI00001B17B2 | RefSeq:XP_015634409.1 | SEG:seg |
Description
P-type cyclin 4;4Cyclin-related 2 domain containing protein. (Os04t0544200-01)
Coordinates
chr4:-:27251810..27254199
Molecular Weight (calculated)
23051.6 Da
IEP (calculated)
4.755
GRAVY (calculated)
0.191
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEEDLADM PRVVGVLAAL LERVTERNDA AAAELELAVA GAPAASAFRA TTKPDITVRA YMARIARFAG CSPACYVVAY IYLDRLLRRR RRACAFSVDS
101: YSVHRLLITA VLAAVKFMDD ICYNNAYFAK VGGVSLPEMN YLEVDFLFGV GFDLNVSPET FGHYCAVLQS EMLCLELEPP PSPSPAPAAR LHCFLSEDDT
201: SSSGSTQHQL AA
101: YSVHRLLITA VLAAVKFMDD ICYNNAYFAK VGGVSLPEMN YLEVDFLFGV GFDLNVSPET FGHYCAVLQS EMLCLELEPP PSPSPAPAAR LHCFLSEDDT
201: SSSGSTQHQL AA
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.