Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30482 | Canola | cytosol | 92.96 | 92.04 |
| CDY23452 | Canola | cytosol | 92.96 | 92.04 |
| CDX83419 | Canola | cytosol | 92.46 | 92.0 |
| CDX95612 | Canola | cytosol | 89.95 | 90.4 |
| AT2G44740.1 | Thale cress | cytosol | 90.45 | 89.11 |
| KRH71916 | Soybean | cytosol | 39.7 | 79.0 |
| CDX74684 | Canola | cytosol | 88.94 | 78.32 |
| KRH48888 | Soybean | nucleus | 72.86 | 71.78 |
| KRH66451 | Soybean | cytosol | 71.36 | 67.94 |
| CDY02124 | Canola | nucleus | 33.67 | 59.29 |
| GSMUA_Achr2P10440_001 | Banana | cytosol | 53.77 | 54.31 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 39.7 | 52.32 |
| CDY08862 | Canola | cytosol | 54.27 | 51.18 |
| CDY65234 | Canola | nucleus | 55.28 | 50.93 |
| CDX70040 | Canola | nucleus | 54.27 | 50.0 |
| Os10t0563900-01 | Rice | nucleus | 51.26 | 48.11 |
| OQU85741 | Sorghum | extracellular | 35.18 | 47.62 |
| GSMUA_Achr1P00510_001 | Banana | nucleus | 48.24 | 46.83 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 48.24 | 46.6 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 46.73 | 44.29 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 46.23 | 44.23 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 45.73 | 43.75 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 45.73 | 42.92 |
| Zm00001d017441_P001 | Maize | cytosol | 44.72 | 42.58 |
| Zm00001d029970_P001 | Maize | nucleus | 48.24 | 42.48 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 46.23 | 42.01 |
| Os04t0544200-01 | Rice | nucleus | 44.72 | 41.98 |
| Os02t0652000-01 | Rice | cytosol | 44.72 | 41.98 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 50.75 | 41.91 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 46.23 | 41.63 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 50.75 | 41.56 |
| Zm00001d002788_P001 | Maize | cytosol | 43.22 | 41.55 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 51.26 | 41.46 |
| EES12591 | Sorghum | cytosol | 45.23 | 41.28 |
| EER94473 | Sorghum | nucleus | 48.74 | 40.76 |
| CDY55656 | Canola | cytosol | 19.1 | 39.58 |
| CDX76682 | Canola | cytosol | 42.21 | 38.01 |
| CDY56463 | Canola | cytosol | 42.21 | 37.84 |
| CDY02123 | Canola | mitochondrion | 20.6 | 37.61 |
| CDY64256 | Canola | cytosol | 16.08 | 36.36 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 45.73 | 36.26 |
| CDY38647 | Canola | cytosol | 37.19 | 35.24 |
| CDY54190 | Canola | cytosol | 37.19 | 35.24 |
| CDY18953 | Canola | mitochondrion, plastid | 39.2 | 35.14 |
| CDX74709 | Canola | mitochondrion, plastid | 39.2 | 35.14 |
| CDY18769 | Canola | nucleus | 37.19 | 34.91 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 27.14 | 34.84 |
| CDY18791 | Canola | nucleus | 37.19 | 34.58 |
| CDX95626 | Canola | mitochondrion, plastid | 37.19 | 33.04 |
| CDX83405 | Canola | mitochondrion, plastid | 37.19 | 33.04 |
| CDY27777 | Canola | cytosol | 35.18 | 33.02 |
| CDX67834 | Canola | cytosol | 38.19 | 32.9 |
| CDY41156 | Canola | plastid | 38.19 | 32.62 |
| CDX98427 | Canola | cytosol | 37.69 | 32.33 |
| HORVU1Hr1G055470.2 | Barley | plastid | 51.26 | 32.08 |
| CDX71800 | Canola | plastid | 37.69 | 31.91 |
| CDY05158 | Canola | cytosol, nucleus, peroxisome | 35.18 | 22.01 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | GO:A0A078IDY0 | UniProt:A0A078IDY0 | EnsemblPlants:CDY48257 | ProteinID:CDY48257 |
| ProteinID:CDY48257.1 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:GSBRNA2T00089123001 | PFAM:PF08613 | PIRSF:PIRSF027110 |
| PANTHER:PTHR15615 | PANTHER:PTHR15615:SF28 | SUPFAM:SSF47954 | UniParc:UPI0004EDD329 | SEG:seg | : |
Description
BnaC04g05160DBnaC04g05160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDY0]
Coordinates
chrLK032762:-:75072..76577
Molecular Weight (calculated)
22636.2 Da
IEP (calculated)
6.942
GRAVY (calculated)
-0.005
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELENPGVM PKLIAFLSSL LERVSESNDL TRRVATQSQS VSVFDGLSRP SITVQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVSAKF LDDRYYNNAY YAKVGGISTK EMNLLELDFL FGLGFDLNVT PNTFHAYFSY LKKEMTLLQP LSLVLVPPRS VLTFNDEEAS HQQQQQLAV
101: ITSVMVSAKF LDDRYYNNAY YAKVGGISTK EMNLLELDFL FGLGFDLNVT PNTFHAYFSY LKKEMTLLQP LSLVLVPPRS VLTFNDEEAS HQQQQQLAV
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.