Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G085830.4 | |
| HORVU6Hr1G013680.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85741 | Sorghum | extracellular | 44.52 | 46.94 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 47.74 | 35.24 |
| Zm00001d017441_P001 | Maize | cytosol | 45.81 | 33.97 |
| Os02t0652000-01 | Rice | cytosol | 45.81 | 33.49 |
| CDY02123 | Canola | mitochondrion | 23.23 | 33.03 |
| Solyc03g093790.2.1 | Tomato | nucleus | 36.77 | 29.08 |
| CDX95612 | Canola | cytosol | 36.77 | 28.79 |
| KRH01000 | Soybean | nucleus | 37.42 | 28.29 |
| Bra000361.1-P | Field mustard | cytosol | 36.13 | 28.14 |
| CDX83419 | Canola | cytosol | 36.13 | 28.0 |
| AT2G44740.1 | Thale cress | cytosol | 36.13 | 27.72 |
| KRH40216 | Soybean | nucleus | 33.55 | 27.66 |
| PGSC0003DMT400080410 | Potato | nucleus | 36.13 | 27.59 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 36.13 | 27.45 |
| AT5G61650.1 | Thale cress | nucleus | 38.71 | 27.4 |
| CDY23452 | Canola | cytosol | 35.48 | 27.36 |
| CDY30482 | Canola | cytosol | 35.48 | 27.36 |
| Bra037638.1-P | Field mustard | cytosol | 35.48 | 27.36 |
| KRH48888 | Soybean | nucleus | 35.48 | 27.23 |
| CDY48257 | Canola | cytosol | 34.84 | 27.14 |
| Solyc01g089850.2.1 | Tomato | nucleus | 35.48 | 26.7 |
| PGSC0003DMT400080046 | Potato | nucleus | 35.48 | 26.44 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 32.9 | 26.29 |
| CDY08862 | Canola | cytosol | 35.48 | 26.07 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 34.19 | 25.73 |
| KRH66451 | Soybean | cytosol | 33.55 | 24.88 |
| Bra004863.1-P | Field mustard | nucleus | 35.48 | 24.77 |
| CDY65234 | Canola | nucleus | 34.19 | 24.54 |
| Bra009262.1-P | Field mustard | nucleus | 33.55 | 24.07 |
| CDX74684 | Canola | cytosol | 34.84 | 23.89 |
| AT5G07450.1 | Thale cress | nucleus | 32.9 | 23.61 |
| CDX70040 | Canola | nucleus | 32.9 | 23.61 |
| HORVU6Hr1G014420.2 | Barley | nucleus | 28.39 | 19.82 |
| HORVU1Hr1G055470.2 | Barley | plastid | 40.0 | 19.5 |
| HORVU2Hr1G107830.1 | Barley | cytosol | 24.52 | 15.38 |
| HORVU1Hr1G062210.1 | Barley | nucleus, plastid | 27.1 | 13.82 |
| KRH71916 | Soybean | cytosol | 6.45 | 10.0 |
| CDY02124 | Canola | nucleus | 7.1 | 9.73 |
| Bra012933.1-P | Field mustard | nucleus | 7.1 | 9.73 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 6.45 | 6.62 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | UniProt:A0A287IZ08 | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:HORVU2Hr1G093210 | EnsemblPlants:HORVU2Hr1G093210.7 | PFAM:PF08613 |
| PANTHER:PTHR15615 | PANTHER:PTHR15615:SF33 | UniParc:UPI000B47A746 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr2H:+:657352978..657354806
Molecular Weight (calculated)
17186.5 Da
IEP (calculated)
4.158
GRAVY (calculated)
0.030
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MPDHTSMTGA CMIEFLVSFE NYYLQTKRTV ATWPLLMDAH YLFQLPPARS IQPYLCYNNA YFAKVGGISL PEMNYLEVDF LFGVGFDLNV SPETFGHYCA
101: ILQSEMLCLE LEPEPLLAPT TAYAPGSRMH CCVSEDDGTS ATATSNSSTQ QQLAA
101: ILQSEMLCLE LEPEPLLAPT TAYAPGSRMH CCVSEDDGTS ATATSNSSTQ QQLAA
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.