Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30482 | Canola | cytosol | 100.0 | 100.0 |
| Bra037638.1-P | Field mustard | cytosol | 99.5 | 99.5 |
| CDX83419 | Canola | cytosol | 94.03 | 94.5 |
| CDY48257 | Canola | cytosol | 92.04 | 92.96 |
| CDX95612 | Canola | cytosol | 91.04 | 92.42 |
| AT2G44740.1 | Thale cress | cytosol | 92.54 | 92.08 |
| KRH71916 | Soybean | cytosol | 41.29 | 83.0 |
| CDX74684 | Canola | cytosol | 85.57 | 76.11 |
| KRH48888 | Soybean | nucleus | 74.13 | 73.76 |
| KRH66451 | Soybean | cytosol | 73.63 | 70.81 |
| CDY02124 | Canola | nucleus | 33.83 | 60.18 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 41.79 | 55.63 |
| GSMUA_Achr2P10440_001 | Banana | cytosol | 53.73 | 54.82 |
| CDY08862 | Canola | cytosol | 54.23 | 51.66 |
| CDY65234 | Canola | nucleus | 53.23 | 49.54 |
| Os10t0563900-01 | Rice | nucleus | 52.24 | 49.53 |
| CDX70040 | Canola | nucleus | 52.74 | 49.07 |
| OQU85741 | Sorghum | extracellular | 35.32 | 48.3 |
| GSMUA_Achr1P00510_001 | Banana | nucleus | 47.76 | 46.83 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 47.76 | 46.6 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 45.77 | 44.23 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 45.77 | 43.81 |
| Zm00001d029970_P001 | Maize | nucleus | 49.25 | 43.81 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 45.77 | 43.4 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 44.78 | 43.27 |
| Zm00001d017441_P001 | Maize | cytosol | 44.28 | 42.58 |
| EER94473 | Sorghum | nucleus | 49.75 | 42.02 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 45.77 | 42.01 |
| Os02t0652000-01 | Rice | cytosol | 44.28 | 41.98 |
| Os04t0544200-01 | Rice | nucleus | 44.28 | 41.98 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 50.25 | 41.91 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 45.77 | 41.63 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 50.25 | 41.56 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 50.75 | 41.46 |
| Zm00001d002788_P001 | Maize | cytosol | 42.29 | 41.06 |
| EES12591 | Sorghum | cytosol | 44.28 | 40.83 |
| CDY55656 | Canola | cytosol | 18.91 | 39.58 |
| CDX76682 | Canola | cytosol | 41.79 | 38.01 |
| CDY56463 | Canola | cytosol | 41.79 | 37.84 |
| CDY02123 | Canola | mitochondrion | 20.4 | 37.61 |
| CDY64256 | Canola | cytosol | 16.42 | 37.5 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 45.27 | 36.26 |
| CDY18769 | Canola | nucleus | 37.81 | 35.85 |
| CDY54190 | Canola | cytosol | 37.31 | 35.71 |
| CDY38647 | Canola | cytosol | 37.31 | 35.71 |
| CDX74709 | Canola | mitochondrion, plastid | 39.3 | 35.59 |
| CDY18953 | Canola | mitochondrion, plastid | 39.3 | 35.59 |
| CDY18791 | Canola | nucleus | 37.81 | 35.51 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 27.36 | 35.48 |
| CDY27777 | Canola | cytosol | 36.32 | 34.43 |
| CDX67834 | Canola | cytosol | 38.81 | 33.77 |
| CDX95626 | Canola | mitochondrion, plastid | 37.31 | 33.48 |
| CDX83405 | Canola | mitochondrion, plastid | 37.31 | 33.48 |
| CDY41156 | Canola | plastid | 38.81 | 33.48 |
| CDX98427 | Canola | cytosol | 38.31 | 33.19 |
| CDX71800 | Canola | plastid | 38.31 | 32.77 |
| HORVU1Hr1G055470.2 | Barley | plastid | 50.75 | 32.08 |
| CDY05158 | Canola | cytosol, nucleus, peroxisome | 35.82 | 22.64 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | GO:A0A078GZ39 | UniProt:A0A078GZ39 | EnsemblPlants:CDY23452 | ProteinID:CDY23452 |
| ProteinID:CDY23452.1 | ProteinID:CDY30482.1 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:GSBRNA2T00022070001 | PFAM:PF08613 |
| PIRSF:PIRSF027110 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF28 | SUPFAM:SSF47954 | UniParc:UPI0004EC956F | SEG:seg |
Description
BnaC04g49800DBnaA04g25830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZ39]
Coordinates
chrLK032143:-:531903..533008
Molecular Weight (calculated)
22876.6 Da
IEP (calculated)
7.562
GRAVY (calculated)
0.009
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELESPGVM PKLIAFLSSL LERVAESNDL TRRVTTQSQS VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTQRQPSLP INSFNVHRLL
101: ITSVMVSAKF LDDLYYNNAY YAKVGGISTK EMNLLELDFL FGLGFDLNVK PNTFHAYFSY LQKEMTLVQP LSLVVVPPRS VITFNDEEAS HQKQQQQQLA
201: V
101: ITSVMVSAKF LDDLYYNNAY YAKVGGISTK EMNLLELDFL FGLGFDLNVK PNTFHAYFSY LQKEMTLVQP LSLVVVPPRS VITFNDEEAS HQKQQQQQLA
201: V
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.