Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000361.1-P | Field mustard | cytosol | 97.5 | 97.99 |
| CDX95612 | Canola | cytosol | 97.0 | 97.98 |
| CDY30482 | Canola | cytosol | 94.5 | 94.03 |
| CDY23452 | Canola | cytosol | 94.5 | 94.03 |
| CDY48257 | Canola | cytosol | 92.0 | 92.46 |
| AT2G44740.1 | Thale cress | cytosol | 92.0 | 91.09 |
| KRH71916 | Soybean | cytosol | 39.5 | 79.0 |
| CDX74684 | Canola | cytosol | 85.0 | 75.22 |
| KRH48888 | Soybean | nucleus | 72.5 | 71.78 |
| KRH66451 | Soybean | cytosol | 71.5 | 68.42 |
| CDY02124 | Canola | nucleus | 33.0 | 58.41 |
| GSMUA_Achr2P10440_001 | Banana | cytosol | 54.5 | 55.33 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 39.5 | 52.32 |
| CDY08862 | Canola | cytosol | 54.0 | 51.18 |
| OQU85741 | Sorghum | extracellular | 36.0 | 48.98 |
| CDY65234 | Canola | nucleus | 52.5 | 48.61 |
| Os10t0563900-01 | Rice | nucleus | 51.5 | 48.58 |
| CDX70040 | Canola | nucleus | 52.0 | 48.15 |
| GSMUA_Achr1P00510_001 | Banana | nucleus | 49.0 | 47.8 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 49.0 | 47.57 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 47.0 | 44.76 |
| Zm00001d029970_P001 | Maize | nucleus | 50.0 | 44.25 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 46.0 | 44.23 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 46.0 | 44.23 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 46.0 | 43.4 |
| Zm00001d017441_P001 | Maize | cytosol | 44.5 | 42.58 |
| Os04t0544200-01 | Rice | nucleus | 45.0 | 42.45 |
| EER94473 | Sorghum | nucleus | 50.5 | 42.44 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 51.0 | 42.32 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 46.5 | 42.08 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 46.0 | 42.01 |
| Os02t0652000-01 | Rice | cytosol | 44.5 | 41.98 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 51.0 | 41.98 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 51.5 | 41.87 |
| Zm00001d002788_P001 | Maize | cytosol | 43.0 | 41.55 |
| EES12591 | Sorghum | cytosol | 45.0 | 41.28 |
| CDY55656 | Canola | cytosol | 19.0 | 39.58 |
| CDY02123 | Canola | mitochondrion | 20.5 | 37.61 |
| CDY64256 | Canola | cytosol | 16.5 | 37.5 |
| CDY54190 | Canola | cytosol | 39.0 | 37.14 |
| CDY38647 | Canola | cytosol | 39.0 | 37.14 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 46.0 | 36.65 |
| CDX76682 | Canola | cytosol | 40.5 | 36.65 |
| CDY56463 | Canola | cytosol | 40.5 | 36.49 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 28.0 | 36.13 |
| CDY18769 | Canola | nucleus | 37.5 | 35.38 |
| CDY18791 | Canola | nucleus | 37.5 | 35.05 |
| CDY27777 | Canola | cytosol | 37.0 | 34.91 |
| CDX74709 | Canola | mitochondrion, plastid | 37.5 | 33.78 |
| CDY18953 | Canola | mitochondrion, plastid | 37.5 | 33.78 |
| CDX67834 | Canola | cytosol | 37.5 | 32.47 |
| HORVU1Hr1G055470.2 | Barley | plastid | 51.5 | 32.39 |
| CDY41156 | Canola | plastid | 37.5 | 32.19 |
| CDX83405 | Canola | mitochondrion, plastid | 36.0 | 32.14 |
| CDX95626 | Canola | mitochondrion, plastid | 36.0 | 32.14 |
| CDX98427 | Canola | cytosol | 37.0 | 31.9 |
| CDX71800 | Canola | plastid | 37.0 | 31.49 |
| CDY05158 | Canola | cytosol, nucleus, peroxisome | 36.5 | 22.96 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | GO:A0A078D518 | EnsemblPlants:CDX83419 | ProteinID:CDX83419 | ProteinID:CDX83419.1 |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:GSBRNA2T00138993001 | PFAM:PF08613 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 |
| PANTHER:PTHR15615:SF28 | SUPFAM:SSF47954 | UniParc:UPI0004EDE73F | SEG:seg | : | : |
Description
BnaA03g20870D
Coordinates
chrLK031832:+:1488328..1489348
Molecular Weight (calculated)
22749.3 Da
IEP (calculated)
6.674
GRAVY (calculated)
-0.025
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELENPGVM PKLIAFLSAL LERVAESNDL TRRVTTQSQS DSVFHGLSRP SITIQSYLER IYKYANCSSS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMTAAKF LDDLYYNNAY YAKVGGISTK EMNLLELDFL FGLGFDLNVT PNTFHAYFSY LQKEMTLLQP LSLVVVPPRS VITFNDEEAS HQKQQQQLAV
101: ITSVMTAAKF LDDLYYNNAY YAKVGGISTK EMNLLELDFL FGLGFDLNVT PNTFHAYFSY LQKEMTLLQP LSLVVVPPRS VITFNDEEAS HQKQQQQLAV
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.