CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11866
KRH36887
KRH42252
KRH58370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44740.1	KRH11866	AT3G48750.1	15197472
AT2G44740.1	KRH36887	AT3G48750.1	15197472
AT2G44740.1	KRH42252	AT3G48750.1	15197472
AT2G44740.1	KRH58370	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48888	Soybean	nucleus	90.43	93.56
KRH71916	Soybean	cytosol	44.02	92.0
KRH40216	Soybean	nucleus	75.6	84.04
KRH01000	Soybean	nucleus	82.3	83.9
AT2G44740.1	Thale cress	cytosol	72.25	74.75
CDY23452	Canola	cytosol	70.81	73.63
CDY30482	Canola	cytosol	70.81	73.63
Bra037638.1-P	Field mustard	cytosol	70.33	73.13
CDX83419	Canola	cytosol	68.42	71.5
CDY48257	Canola	cytosol	67.94	71.36
Bra000361.1-P	Field mustard	cytosol	67.46	70.85
CDX95612	Canola	cytosol	66.99	70.71
KRH07327	Soybean	endoplasmic reticulum, extracellular	45.45	62.91
Bra004863.1-P	Field mustard	nucleus	63.64	59.91
CDX74684	Canola	cytosol	64.11	59.29
GSMUA_Achr2P10440_001	Banana	cytosol	51.67	54.82
OQU85741	Sorghum	extracellular	35.41	50.34
Os10t0563900-01	Rice	nucleus	49.76	49.06
GSMUA_Achr1P00510_001	Banana	nucleus	47.85	48.78
GSMUA_Achr5P12540_001	Banana	cytosol, nucleus, plastid	47.37	48.06
TraesCS6B01G282600.1	Wheat	cytosol	46.41	46.63
TraesCS6A01G241800.1	Wheat	nucleus	46.41	45.75
HORVU6Hr1G061870.1	Barley	cytosol	45.93	45.71
TraesCS6D01G223800.1	Wheat	cytosol	44.98	45.19
Zm00001d029970_P001	Maize	nucleus	48.8	45.13
Zm00001d017441_P001	Maize	cytosol	44.98	44.98
Os02t0652000-01	Rice	cytosol	44.5	43.87
TraesCS2B01G410000.1	Wheat	nucleus	45.93	43.84
KRG96839	Soybean	nucleus	36.84	43.75
EER94473	Sorghum	nucleus	49.28	43.28
TraesCS2D01G389800.1	Wheat	nucleus	45.45	42.99
TraesCS1D01G218800.1	Wheat	nucleus	48.8	42.32
Os04t0544200-01	Rice	nucleus	42.58	41.98
TraesCS1A01G217000.1	Wheat	cytosol	48.8	41.98
TraesCS1B01G230100.1	Wheat	nucleus	49.28	41.87
Zm00001d002788_P001	Maize	cytosol	41.15	41.55
EES12591	Sorghum	cytosol	43.06	41.28
KRH67205	Soybean	nucleus	40.67	39.17
TraesCS2A01G391500.1	Wheat	nucleus	45.45	37.85
KRH26828	Soybean	cytosol	41.63	37.5
KRH22528	Soybean	nucleus	41.63	37.5
KRG95527	Soybean	nucleus	40.19	34.15
KRH65411	Soybean	cytosol, nucleus, plastid	36.36	33.93
HORVU2Hr1G093210.7	Barley	nucleus	24.88	33.55
KRH76137	Soybean	plastid	35.89	33.48
KRG88936	Soybean	nucleus	35.41	33.18
HORVU1Hr1G055470.2	Barley	plastid	49.76	32.7

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	EMBL:ACUP02001966	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like
EnsemblPlantsGene:GLYMA_03G107800	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901
UniProt:I1JMN2	EnsemblPlants:KRH66451	ProteinID:KRH66451	ProteinID:KRH66451.1	PFAM:PF08613	PIRSF:PIRSF027110
PANTHER:PTHR15615	PANTHER:PTHR15615:SF28	SUPFAM:SSF47954	UniParc:UPI00023C1751	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:30829478..30831847

Molecular Weight (calculated)

24010.0 Da

IEP (calculated)

7.037

GRAVY (calculated)

-0.086

Length

209 amino acids

Sequence
(BLAST)

001: MSIAEEESPS VMPKVITFLC SLLERVAESN DHNQHLQQHQ KISVFHGLTR PNISIQCYLE RIFKYANCSP SCFVVAYVYL DRFTQRQPSL PINSFNVHRL
101: LITSVMVAAK FMDDMFYNNA HYAKVGGITK VEMNFLELDF LFGLGFHLNV TPGTFQAYCV HLQREMLLIQ PLNFSDSTLN LGQSLKAHLC FNEDECSHQK
201: QKQQQQLAV

Best Arabidopsis Sequence Match ( AT2G44740.1 )
(BLAST)

001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV

Arabidopsis Description

CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.