Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23452 | Canola | cytosol | 92.08 | 92.54 |
| CDY30482 | Canola | cytosol | 92.08 | 92.54 |
| Bra037638.1-P | Field mustard | cytosol | 91.58 | 92.04 |
| CDX83419 | Canola | cytosol | 91.09 | 92.0 |
| Bra000361.1-P | Field mustard | cytosol | 90.1 | 91.46 |
| CDX95612 | Canola | cytosol | 89.11 | 90.91 |
| CDY48257 | Canola | cytosol | 89.11 | 90.45 |
| KRH71916 | Soybean | cytosol | 41.09 | 83.0 |
| KRH48888 | Soybean | nucleus | 75.25 | 75.25 |
| CDX74684 | Canola | cytosol | 83.17 | 74.34 |
| Bra004863.1-P | Field mustard | nucleus | 81.19 | 73.87 |
| KRH66451 | Soybean | cytosol | 74.75 | 72.25 |
| GSMUA_Achr2P10440_001 | Banana | cytosol | 54.46 | 55.84 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 41.58 | 55.63 |
| AT5G61650.1 | Thale cress | nucleus | 55.45 | 51.14 |
| Os10t0563900-01 | Rice | nucleus | 51.98 | 49.53 |
| AT5G07450.1 | Thale cress | nucleus | 52.48 | 49.07 |
| OQU85741 | Sorghum | extracellular | 35.64 | 48.98 |
| GSMUA_Achr1P00510_001 | Banana | nucleus | 48.51 | 47.8 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 48.51 | 47.57 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 45.54 | 43.81 |
| Zm00001d029970_P001 | Maize | nucleus | 49.01 | 43.81 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 45.05 | 43.75 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 45.05 | 43.75 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 45.05 | 42.92 |
| Zm00001d017441_P001 | Maize | cytosol | 44.06 | 42.58 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 46.04 | 42.47 |
| Os02t0652000-01 | Rice | cytosol | 44.55 | 42.45 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 50.49 | 42.32 |
| EER94473 | Sorghum | nucleus | 49.51 | 42.02 |
| Os04t0544200-01 | Rice | nucleus | 44.06 | 41.98 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 50.49 | 41.98 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 50.99 | 41.87 |
| Zm00001d002788_P001 | Maize | cytosol | 42.57 | 41.55 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 45.05 | 41.18 |
| EES12591 | Sorghum | cytosol | 44.06 | 40.83 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 45.54 | 36.65 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 27.72 | 36.13 |
| AT3G63120.2 | Thale cress | cytosol | 39.11 | 35.75 |
| AT3G05327.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 36.63 | 34.91 |
| AT3G21870.1 | Thale cress | cytosol | 36.14 | 34.76 |
| AT3G60550.1 | Thale cress | mitochondrion, nucleus, plastid | 38.12 | 33.48 |
| AT2G45080.1 | Thale cress | cytosol | 36.63 | 33.33 |
| HORVU1Hr1G055470.2 | Barley | plastid | 50.99 | 32.39 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | EntrezGene:819082 | UniProt:A0A178VXY9 | ProteinID:AAC27476.1 | ProteinID:AEC10461.1 |
| EMBL:AK229380 | ArrayExpress:AT2G44740 | EnsemblPlantsGene:AT2G44740 | RefSeq:AT2G44740 | TAIR:AT2G44740 | RefSeq:AT2G44740-TAIR-G |
| EnsemblPlants:AT2G44740.1 | TAIR:AT2G44740.1 | EMBL:BT021978 | EMBL:BT023473 | Symbol:CYCP4;1 | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0019901 | GO:GO:0051301 | RefSeq:NP_182002.1 | UniProt:O80513 | ProteinID:OAP10704.1 | PFAM:PF08613 |
| PIRSF:PIRSF027110 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF28 | SUPFAM:SSF47954 | UniParc:UPI00000336E6 | SEG:seg |
Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
Coordinates
chr2:-:18441828..18443405
Molecular Weight (calculated)
23044.7 Da
IEP (calculated)
7.562
GRAVY (calculated)
0.012
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.