Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007544.1-P | Field mustard | plastid | 93.91 | 92.7 |
| CDY41156 | Canola | plastid | 93.04 | 91.85 |
| CDX71800 | Canola | plastid | 92.61 | 90.64 |
| CDX67834 | Canola | cytosol | 90.87 | 90.48 |
| Bra003420.1-P | Field mustard | cytosol | 86.52 | 90.45 |
| AT2G45080.1 | Thale cress | cytosol | 85.65 | 88.74 |
| CDX98427 | Canola | cytosol | 89.13 | 88.36 |
| KRG88936 | Soybean | nucleus | 71.3 | 73.54 |
| VIT_15s0021g02680.t01 | Wine grape | plastid | 72.61 | 72.93 |
| KRH76137 | Soybean | plastid | 70.87 | 72.77 |
| PGSC0003DMT400066949 | Potato | nucleus | 69.57 | 72.73 |
| Solyc01g090800.2.1 | Tomato | cytosol | 69.13 | 72.27 |
| KRH65411 | Soybean | cytosol, nucleus, plastid | 70.0 | 71.88 |
| GSMUA_Achr4P24630_001 | Banana | nucleus | 56.96 | 56.47 |
| Os04t0552300-01 | Rice | cytosol | 43.91 | 46.54 |
| TraesCS2A01G413300.1 | Wheat | cytosol | 41.3 | 41.13 |
| EES11236 | Sorghum | cytosol | 41.3 | 40.6 |
| TraesCS2B01G432000.1 | Wheat | cytosol | 40.87 | 40.52 |
| TraesCS2D01G411300.1 | Wheat | cytosol | 40.87 | 40.52 |
| Zm00001d002733_P001 | Maize | cytosol | 41.74 | 40.51 |
| AT2G44740.1 | Thale cress | cytosol | 33.48 | 38.12 |
| AT3G63120.2 | Thale cress | cytosol | 33.04 | 34.39 |
| AT5G61650.1 | Thale cress | nucleus | 31.74 | 33.33 |
| AT3G21870.1 | Thale cress | cytosol | 30.0 | 32.86 |
| AT5G07450.1 | Thale cress | nucleus | 30.43 | 32.41 |
| AT3G05327.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 26.52 | 28.77 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | EntrezGene:825226 | ProteinID:AEE80078.1 | ArrayExpress:AT3G60550 | EnsemblPlantsGene:AT3G60550 |
| RefSeq:AT3G60550 | TAIR:AT3G60550 | RefSeq:AT3G60550-TAIR-G | EnsemblPlants:AT3G60550.1 | TAIR:AT3G60550.1 | EMBL:BT012357 |
| ProteinID:CAB81841.1 | Symbol:CYCP3;2 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | GO:GO:0051301 | RefSeq:NP_191614.1 |
| PFAM:PF08613 | PIRSF:PIRSF027110 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009046 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025281 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF15 | UniProt:Q9M205 | SUPFAM:SSF47954 | UniParc:UPI000009F73B |
| SEG:seg | : | : | : | : | : |
Description
CYCU2-2Cyclin-U2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M205]
Coordinates
chr3:+:22379740..22380906
Molecular Weight (calculated)
26463.0 Da
IEP (calculated)
9.417
GRAVY (calculated)
-0.197
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSNSLTIS PRKLRSDLYS YSYQNNSKTP LVISVLSSLI DRTLTRNERI SRRALPSSGA GGKTQIFDCR EIPDMTIQSY LGRIFRYTKA GPSVYVVAYV
101: YIDRFCQTNP GFRISLTNVH RLLITTIMIA SKYVEDLNYR NSYFAKVGGL ETEDLNKLEL EFLFLMGFKL HVNVSVFESY CCHLEREVSF GGGYQIEKAL
201: RCAEEIKSRQ MIIQDPKHHH HHHQLARILL
101: YIDRFCQTNP GFRISLTNVH RLLITTIMIA SKYVEDLNYR NSYFAKVGGL ETEDLNKLEL EFLFLMGFKL HVNVSVFESY CCHLEREVSF GGGYQIEKAL
201: RCAEEIKSRQ MIIQDPKHHH HHHQLARILL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.