Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400077428 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45080.1 | PGSC0003DMT400077428 | AT3G48750.1 | 15197472 |
| AT3G60550.1 | PGSC0003DMT400077428 | AT3G48750.1 | 15197472 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g090800.2.1 | Tomato | cytosol | 97.27 | 97.27 |
| VIT_15s0021g02680.t01 | Wine grape | plastid | 81.82 | 78.6 |
| KRH76137 | Soybean | plastid | 80.0 | 78.57 |
| KRH65411 | Soybean | cytosol, nucleus, plastid | 79.55 | 78.12 |
| KRG88936 | Soybean | nucleus | 78.18 | 77.13 |
| Bra004888.1-P | Field mustard | mitochondrion, plastid | 75.0 | 74.32 |
| CDX74709 | Canola | mitochondrion, plastid | 75.0 | 74.32 |
| CDY18953 | Canola | mitochondrion, plastid | 74.55 | 73.87 |
| AT2G45080.1 | Thale cress | cytosol | 73.18 | 72.52 |
| Bra000369.1-P | Field mustard | plastid | 73.18 | 71.88 |
| CDX83405 | Canola | mitochondrion, plastid | 72.73 | 71.43 |
| CDX95626 | Canola | mitochondrion, plastid | 72.73 | 71.43 |
| AT3G60550.1 | Thale cress | mitochondrion, nucleus, plastid | 72.73 | 69.57 |
| Bra003420.1-P | Field mustard | cytosol | 68.18 | 68.18 |
| Bra007544.1-P | Field mustard | plastid | 71.82 | 67.81 |
| CDY41156 | Canola | plastid | 71.36 | 67.38 |
| CDX67834 | Canola | cytosol | 70.0 | 66.67 |
| CDX71800 | Canola | plastid | 70.91 | 66.38 |
| CDX98427 | Canola | cytosol | 68.18 | 64.66 |
| GSMUA_Achr4P24630_001 | Banana | nucleus | 59.09 | 56.03 |
| Os04t0552300-01 | Rice | cytosol | 47.27 | 47.93 |
| Zm00001d002733_P001 | Maize | cytosol | 46.36 | 43.04 |
| TraesCS2A01G413300.1 | Wheat | cytosol | 43.64 | 41.56 |
| EES11236 | Sorghum | cytosol | 44.09 | 41.45 |
| TraesCS2B01G432000.1 | Wheat | cytosol | 43.64 | 41.38 |
| TraesCS2D01G411300.1 | Wheat | cytosol | 43.64 | 41.38 |
| PGSC0003DMT400033559 | Potato | nucleus | 35.91 | 36.41 |
| PGSC0003DMT400080410 | Potato | nucleus | 32.73 | 35.47 |
| PGSC0003DMT400080046 | Potato | nucleus | 33.18 | 35.1 |
| PGSC0003DMT400081162 | Potato | cytosol | 14.55 | 32.0 |
| PGSC0003DMT400067297 | Potato | cytosol, nucleus | 32.73 | 32.0 |
| PGSC0003DMT400008886 | Potato | nucleus | 32.27 | 31.42 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:102583298 | MapMan:13.1.1.1.7 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like |
| GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | UniProt:M1CGF4 |
| PFAM:PF08613 | EnsemblPlantsGene:PGSC0003DMG400026023 | PGSC:PGSC0003DMG400026023 | EnsemblPlants:PGSC0003DMT400066949 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 |
| PANTHER:PTHR15615:SF15 | SUPFAM:SSF47954 | UniParc:UPI000296D90E | RefSeq:XP_006347912.1 | : | : |
Description
Nuc-1 negative regulatory protein preg [Source:PGSC_GENE;Acc:PGSC0003DMG400026023]
Coordinates
chr1:+:70096672..70097905
Molecular Weight (calculated)
25905.4 Da
IEP (calculated)
8.535
GRAVY (calculated)
-0.233
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MANISPRKLR DDLYCYSYQQ DSSLPLVISV LASLIERNLA RNERIAKNCT WALSKNVRTR VFDCHETPDM TIQSYLERIF RYTRAGPSVY VVAYVYIDRF
101: CQLYPEFRIS PRNVHRLLIT TIMVASKYVE DMNYRNSYFA RVGGLTTNEM NKLEMEFLFM MGFKFHVNVS VFESYCRHLE REVSIGGGYE IERTLRCAEE
201: IKSKQIEERS CCSQITRVLL
101: CQLYPEFRIS PRNVHRLLIT TIMVASKYVE DMNYRNSYFA RVGGLTTNEM NKLEMEFLFM MGFKFHVNVS VFESYCRHLE REVSIGGGYE IERTLRCAEE
201: IKSKQIEERS CCSQITRVLL
001: MAVSNSLTIS PRKLRSDLYS YSYQNNSKTP LVISVLSSLI DRTLTRNERI SRRALPSSGA GGKTQIFDCR EIPDMTIQSY LGRIFRYTKA GPSVYVVAYV
101: YIDRFCQTNP GFRISLTNVH RLLITTIMIA SKYVEDLNYR NSYFAKVGGL ETEDLNKLEL EFLFLMGFKL HVNVSVFESY CCHLEREVSF GGGYQIEKAL
201: RCAEEIKSRQ MIIQDPKHHH HHHQLARILL
101: YIDRFCQTNP GFRISLTNVH RLLITTIMIA SKYVEDLNYR NSYFAKVGGL ETEDLNKLEL EFLFLMGFKL HVNVSVFESY CCHLEREVSF GGGYQIEKAL
201: RCAEEIKSRQ MIIQDPKHHH HHHQLARILL
Arabidopsis Description
CYCU2-2Cyclin-U2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M205]
SUBAcon: [mitochondrion,plastid,nucleus]
SUBAcon: [mitochondrion,plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.