Factsheet for PGSC0003DMT400033559

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065200.2.1	Tomato	nucleus	95.39	87.34
KRH67205	Soybean	nucleus	67.74	67.74
VIT_07s0104g00540.t01	Wine grape	nucleus	70.51	67.7
KRG95527	Soybean	nucleus	67.74	59.76
Os05t0398000-01	Rice	cytosol	35.02	55.07
AT3G63120.2	Thale cress	cytosol	52.07	51.13
PGSC0003DMT400008886	Potato	nucleus	52.07	50.0
PGSC0003DMT400081162	Potato	cytosol	23.04	50.0
GSMUA_AchrUn_...	Banana	nucleus	53.92	48.95
Bra007729.1-P	Field mustard	cytosol	49.77	48.65
CDY56463	Canola	cytosol	49.77	48.65
CDX76682	Canola	cytosol	49.31	48.42
EES19489	Sorghum	cytosol	50.69	46.41
TraesCS1D01G248800.1	Wheat	nucleus	49.77	46.15
Zm00001d038133_P002	Maize	nucleus	49.77	45.76
TraesCS1A01G249300.1	Wheat	nucleus	49.31	44.77
TraesCS1B01G260000.1	Wheat	nucleus	49.31	44.77
PGSC0003DMT400080410	Potato	nucleus	38.25	40.89
PGSC0003DMT400067297	Potato	cytosol, nucleus	41.94	40.44
PGSC0003DMT400080046	Potato	nucleus	37.33	38.94
PGSC0003DMT400066949	Potato	nucleus	36.41	35.91
HORVU1Hr1G062210.1	Barley	nucleus, plastid	48.85	34.87

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:102587169	MapMan:13.1.1.1.7	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like
GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	UniProt:M1AZB3
PFAM:PF08613	EnsemblPlantsGene:PGSC0003DMG400012887	PGSC:PGSC0003DMG400012887	EnsemblPlants:PGSC0003DMT400033559	PIRSF:PIRSF027110	PANTHER:PTHR15615
PANTHER:PTHR15615:SF40	SUPFAM:SSF47954	UniParc:UPI0002950631	RefSeq:XP_006349678.1	SEG:seg	:

Description

Cyclin-dependent protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400012887]

Coordinates

chr9:+:47648990..47653012

Molecular Weight (calculated)

24317.2 Da

IEP (calculated)

6.982

GRAVY (calculated)

-0.070

Length

217 amino acids

Sequence
(BLAST)

001: MGTLAPEPEV TCSKKYLALG LKISGKEKSG KPRVLSLLST LLERSVQNNE SLLESSQSED VITIFHGSRA PSLSIEQYLD RIYKYSCCSP SCFVVAHIYM
101: ERFIECTGAH LTSLNVHRLL ITSVMVAAKF IDDAFYNNAY YARVGGVTTK ELNKLEMKFL FGLDFQLHVN VQTFGSYCSL LEKEGTVGLQ IECSIQACRI
201: NESWSNKDDS TWSQIAR

Best Arabidopsis Sequence Match ( AT3G63120.2 )
(BLAST)

001: MDSLATDPAF IDSDVYLRLG LIIEGKRLKK PPTVLSRLSS SLERSLLLNH DDKILLGSPD SVTVFDGRSP PEISIAHYLD RIFKYSCCSP SCFVIAHIYI
101: DHFLHKTRAL LKPLNVHRLI ITTVMLAAKV FDDRYFNNAY YARVGGVTTR ELNRLEMELL FTLDFKLQVD PQTFHTHCCQ LEKQNRDGFQ IEWPIKEACR
201: ANKETWQKRT PDSLCSQTTA R

Arabidopsis Description

CYCU3-1Cyclin-U3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB60]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.