Factsheet for HORVU1Hr1G062210.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G248800.1	Wheat	nucleus	71.38	92.73
TraesCS1B01G260000.1	Wheat	nucleus	72.7	92.47
TraesCS1A01G249300.1	Wheat	nucleus	71.71	91.21
Os05t0398000-01	Rice	cytosol	33.88	74.64
Zm00001d038133_P002	Maize	nucleus	54.28	69.92
EES19489	Sorghum	cytosol	54.28	69.62
VIT_07s0104g00540.t01	Wine grape	nucleus	37.83	50.88
KRH67205	Soybean	nucleus	35.53	49.77
KRG96839	Soybean	nucleus	28.62	49.43
GSMUA_AchrUn_...	Banana	nucleus	38.82	49.37
PGSC0003DMT400033559	Potato	nucleus	34.87	48.85
Solyc09g065200.2.1	Tomato	nucleus	35.86	45.99
KRG95527	Soybean	nucleus	36.18	44.72
VIT_14s0128g00410.t01	Wine grape	nucleus	31.25	44.6
AT3G63120.2	Thale cress	cytosol	29.28	40.27
PGSC0003DMT400008886	Potato	nucleus	29.93	40.27
Solyc01g098930.2.1	Tomato	cytosol	29.93	40.27
CDY27777	Canola	cytosol	27.96	40.09
CDY18769	Canola	nucleus	27.96	40.09
CDY18791	Canola	nucleus	27.96	39.72
CDX76682	Canola	cytosol	28.29	38.91
CDY56463	Canola	cytosol	28.29	38.74
Bra007729.1-P	Field mustard	cytosol	28.29	38.74
AT3G05327.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	26.97	38.68
PGSC0003DMT400081162	Potato	cytosol	12.17	37.0
HORVU6Hr1G014420.2	Barley	nucleus	25.0	34.23
HORVU6Hr1G061870.1	Barley	cytosol	21.71	31.43
HORVU2Hr1G093210.7	Barley	nucleus	13.82	27.1
HORVU1Hr1G055470.2	Barley	plastid	26.64	25.47
HORVU2Hr1G107830.1	Barley	cytosol	20.39	25.1
CDY05158	Canola	cytosol, nucleus, peroxisome	25.0	23.9

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	UniProt:A0A287FWH9	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_PHO80-like
GO:GO:0000079	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	EnsemblPlantsGene:HORVU1Hr1G062210
EnsemblPlants:HORVU1Hr1G062210.1	PFAM:PF08613	PANTHER:PTHR15615	PANTHER:PTHR15615:SF40	SUPFAM:SSF47954	UniParc:UPI000B480D79
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:448597652..448600095

Molecular Weight (calculated)

33629.1 Da

IEP (calculated)

8.855

GRAVY (calculated)

-0.326

Length

304 amino acids

Sequence
(BLAST)

001: AHDTSPLSPR QHPKVAAAVP TEKARSGGRG EECEAASSSS SSALKKKKKA SFPTPRAQAQ SKAHLCLPME SSKTDAGDKH LESYLTLGLT IPQSKKGDTN
101: FPKVLSLLAT YLGRSVQKNE QLLGSDRIKE TTTIFHGQRV PDLSIQLYAE RIFKYAECSP SCFVLALVYM ERYLQQPNVY MTPFSVHRLL ITSVVVAAKF
201: TDDGFFDNAF YARVGGISTV EMNRLELDLL FNLDFRLKVN LETFGSYCLQ LEKHAPVSPE RLPVQVHCVK GSKDLSYSNS SADEFCQSKL VRQSYSSQAL
301: QGCS

Best Arabidopsis Sequence Match ( AT3G63120.2 )
(BLAST)

001: MDSLATDPAF IDSDVYLRLG LIIEGKRLKK PPTVLSRLSS SLERSLLLNH DDKILLGSPD SVTVFDGRSP PEISIAHYLD RIFKYSCCSP SCFVIAHIYI
101: DHFLHKTRAL LKPLNVHRLI ITTVMLAAKV FDDRYFNNAY YARVGGVTTR ELNRLEMELL FTLDFKLQVD PQTFHTHCCQ LEKQNRDGFQ IEWPIKEACR
201: ANKETWQKRT PDSLCSQTTA R

Arabidopsis Description

CYCU3-1Cyclin-U3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB60]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.