Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G085830.4 | |
| HORVU6Hr1G013680.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G217000.1 | Wheat | cytosol | 71.7 | 93.83 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 70.44 | 92.95 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 71.07 | 91.87 |
| Os10t0563900-01 | Rice | nucleus | 50.63 | 75.94 |
| Zm00001d029970_P001 | Maize | nucleus | 51.57 | 72.57 |
| EER94473 | Sorghum | nucleus | 51.89 | 69.33 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 40.25 | 62.14 |
| KRH71916 | Soybean | cytosol | 18.55 | 59.0 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 38.68 | 58.57 |
| KRH40216 | Soybean | nucleus | 31.76 | 53.72 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 32.08 | 52.58 |
| CDX95612 | Canola | cytosol | 32.7 | 52.53 |
| KRH48888 | Soybean | nucleus | 33.02 | 51.98 |
| CDX83419 | Canola | cytosol | 32.39 | 51.5 |
| CDY48257 | Canola | cytosol | 32.08 | 51.26 |
| Bra000361.1-P | Field mustard | cytosol | 32.08 | 51.26 |
| KRH01000 | Soybean | nucleus | 33.02 | 51.22 |
| AT2G44740.1 | Thale cress | cytosol | 32.39 | 50.99 |
| Solyc01g089850.2.1 | Tomato | nucleus | 33.02 | 50.97 |
| CDY23452 | Canola | cytosol | 32.08 | 50.75 |
| CDY30482 | Canola | cytosol | 32.08 | 50.75 |
| Bra037638.1-P | Field mustard | cytosol | 32.08 | 50.75 |
| Solyc03g093790.2.1 | Tomato | nucleus | 31.13 | 50.51 |
| VIT_15s0021g01280.t01 | Wine grape | nucleus | 32.39 | 50.49 |
| PGSC0003DMT400080410 | Potato | nucleus | 32.08 | 50.25 |
| PGSC0003DMT400080046 | Potato | nucleus | 32.7 | 50.0 |
| KRH66451 | Soybean | cytosol | 32.7 | 49.76 |
| CDY02124 | Canola | nucleus | 17.61 | 49.56 |
| Bra012933.1-P | Field mustard | nucleus | 17.61 | 49.56 |
| AT5G61650.1 | Thale cress | nucleus | 32.08 | 46.58 |
| Bra009262.1-P | Field mustard | nucleus | 31.45 | 46.3 |
| CDY65234 | Canola | nucleus | 31.13 | 45.83 |
| HORVU6Hr1G014420.2 | Barley | nucleus | 31.76 | 45.5 |
| CDX70040 | Canola | nucleus | 30.82 | 45.37 |
| Bra004863.1-P | Field mustard | nucleus | 31.45 | 45.05 |
| CDY08862 | Canola | cytosol | 29.87 | 45.02 |
| AT5G07450.1 | Thale cress | nucleus | 30.19 | 44.44 |
| CDX74684 | Canola | cytosol | 31.45 | 44.25 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 19.5 | 40.0 |
| KRH07327 | Soybean | endoplasmic reticulum, extracellular | 18.87 | 39.74 |
| CDY02123 | Canola | mitochondrion | 11.01 | 32.11 |
| HORVU2Hr1G107830.1 | Barley | cytosol | 23.58 | 30.36 |
| HORVU1Hr1G062210.1 | Barley | nucleus, plastid | 25.47 | 26.64 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | UniProt:A0A287FPG7 | InterPro:Cyclin-like_sf | InterPro:Cyclin_PHO80-like | GO:GO:0000079 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:HORVU1Hr1G055470 | EnsemblPlants:HORVU1Hr1G055470.2 |
| PFAM:PF08613 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF28 | SUPFAM:SSF47954 | UniParc:UPI000B46B367 | SEG:seg |
Description
No Description!
Coordinates
chrchr1H:+:406369900..406371707
Molecular Weight (calculated)
34769.6 Da
IEP (calculated)
6.506
GRAVY (calculated)
-0.002
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: FIPPVHSSSK ILSIKAPSHP RIPLASASLS LQPLYIHHHH PPPHLPLSPP SLTSTSKTPS WLATAAAEEV RQETEGATMT MAAEDQAAVP RVVSILSALL
101: ERVAERNDVV AAVERRIRDV EEDDDQGEDG RRETTSMKKK AVSAFQGLTK PAISVGGYLE RIFRFAGCSP SCYVVAYIYL DRFLRRRPAL AVDSFNVHRL
201: LITSVLTAVK FVDDMCYNNA YFARVGGISL MEMNYLEVDF LFGIAFDLNV TPAVFASYCA VLQTEMAYLE HPPPSIDAVS PTSLLQHCLP DQEVDAAATA
301: AAAATKAGCH RHQQQLTV
101: ERVAERNDVV AAVERRIRDV EEDDDQGEDG RRETTSMKKK AVSAFQGLTK PAISVGGYLE RIFRFAGCSP SCYVVAYIYL DRFLRRRPAL AVDSFNVHRL
201: LITSVLTAVK FVDDMCYNNA YFARVGGISL MEMNYLEVDF LFGIAFDLNV TPAVFASYCA VLQTEMAYLE HPPPSIDAVS PTSLLQHCLP DQEVDAAATA
301: AAAATKAGCH RHQQQLTV
001: MAELENPSVM SKLIAFLSSL LERVAESNDL TRRVATQSQR VSVFHGLSRP TITIQSYLER IFKYANCSPS CFVVAYVYLD RFTHRQPSLP INSFNVHRLL
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
101: ITSVMVAAKF LDDLYYNNAY YAKVGGISTK EMNFLELDFL FGLGFELNVT PNTFNAYFSY LQKEMTLLQP LSLVVVPSSR SLITFNDDEA SHQKQQQQQL
201: AV
Arabidopsis Description
CYCU4-1Cyclin-U4-1 [Source:UniProtKB/Swiss-Prot;Acc:O80513]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.