Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018036.1-P | |
| Bra029917.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61650.1 | Bra018036.1-P | AT3G48750.1 | 15197472 |
| AT5G61650.1 | Bra029917.1-P | AT3G48750.1 | 15197472 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02124 | Canola | nucleus | 100.0 | 100.0 |
| CDY08862 | Canola | cytosol | 98.23 | 52.61 |
| AT5G61650.1 | Thale cress | nucleus | 84.07 | 43.38 |
| Bra009262.1-P | Field mustard | nucleus | 77.88 | 40.74 |
| KRH40216 | Soybean | nucleus | 61.95 | 37.23 |
| PGSC0003DMT400080410 | Potato | nucleus | 62.83 | 34.98 |
| VIT_16s0013g00630.t01 | Wine grape | plasma membrane | 59.29 | 34.54 |
| Bra037638.1-P | Field mustard | cytosol | 60.18 | 33.83 |
| Solyc03g093790.2.1 | Tomato | nucleus | 58.41 | 33.67 |
| KRH01000 | Soybean | nucleus | 61.06 | 33.66 |
| Bra000361.1-P | Field mustard | cytosol | 57.52 | 32.66 |
| GSMUA_Achr2P10440_001 | Banana | cytosol | 53.1 | 30.46 |
| Bra004863.1-P | Field mustard | nucleus | 59.29 | 30.18 |
| GSMUA_Achr1P00510_001 | Banana | nucleus | 50.44 | 27.8 |
| Os10t0563900-01 | Rice | nucleus | 51.33 | 27.36 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 47.79 | 26.21 |
| Zm00001d029970_P001 | Maize | nucleus | 51.33 | 25.66 |
| EER94473 | Sorghum | nucleus | 51.33 | 24.37 |
| HORVU6Hr1G061870.1 | Barley | cytosol | 43.36 | 23.33 |
| TraesCS1D01G218800.1 | Wheat | nucleus | 49.56 | 23.24 |
| TraesCS6D01G223800.1 | Wheat | cytosol | 42.48 | 23.08 |
| TraesCS6B01G282600.1 | Wheat | cytosol | 42.48 | 23.08 |
| TraesCS1A01G217000.1 | Wheat | cytosol | 49.56 | 23.05 |
| TraesCS1B01G230100.1 | Wheat | nucleus | 49.56 | 22.76 |
| TraesCS6A01G241800.1 | Wheat | nucleus | 42.48 | 22.64 |
| Zm00001d017441_P001 | Maize | cytosol | 41.59 | 22.49 |
| TraesCS2B01G410000.1 | Wheat | nucleus | 43.36 | 22.37 |
| Os02t0652000-01 | Rice | cytosol | 41.59 | 22.17 |
| Os04t0544200-01 | Rice | nucleus | 41.59 | 22.17 |
| Zm00001d002788_P001 | Maize | cytosol | 39.82 | 21.74 |
| TraesCS2D01G389800.1 | Wheat | nucleus | 41.59 | 21.27 |
| EES12591 | Sorghum | cytosol | 40.71 | 21.1 |
| Bra031315.1-P | Field mustard | cytosol | 38.94 | 20.95 |
| OQU85741 | Sorghum | extracellular | 25.66 | 19.73 |
| TraesCS2A01G391500.1 | Wheat | nucleus | 42.48 | 19.12 |
| Bra003420.1-P | Field mustard | cytosol | 34.51 | 17.73 |
| HORVU1Hr1G055470.2 | Barley | plastid | 49.56 | 17.61 |
| Bra007729.1-P | Field mustard | cytosol | 33.63 | 17.12 |
| Bra004888.1-P | Field mustard | mitochondrion, plastid | 32.74 | 16.67 |
| Bra007544.1-P | Field mustard | plastid | 33.63 | 16.31 |
| Bra000369.1-P | Field mustard | plastid | 30.97 | 15.62 |
| HORVU2Hr1G093210.7 | Barley | nucleus | 9.73 | 7.1 |
| CDY02123 | Canola | mitochondrion | 6.19 | 6.42 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | EnsemblPlantsGene:Bra012933 | EnsemblPlants:Bra012933.1 | EnsemblPlants:Bra012933.1-P | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0019901 | UniProt:M4D8X3 | PFAM:PF08613 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF28 |
| SUPFAM:SSF47954 | UniParc:UPI00025405E0 | : | : | : | : |
Description
AT5G61650 (E=5e-052) CYCP4;2, CYCP4 | CYCP4;2 (CYCLIN P4;2); cyclin-dependent protein kinase
Coordinates
chrA03:+:21440305..21440646
Molecular Weight (calculated)
13113.0 Da
IEP (calculated)
8.685
GRAVY (calculated)
0.065
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQDLQEPMA EIMPNIITAM SYLLQRVSET NDHLSQKQSI SGFHGITKPS ISIRSYLERI FKYANCSHSC YIVAYIYLDR FIKKQPFLLI NSFSVHRFII
101: TSVLVSAKFM DDL
101: TSVLVSAKFM DDL
001: MADQIEIQRM NQDLQEPLAE IMPSVLTAMS YLLQRVSETN DNLSQKQKPS SFTGVTKPSI SIRSYLERIF EYANCSYSCY IVAYIYLDRF VKKQPFLPIN
101: SFNVHRLIIT SVLVSAKFMD DLSYNNEYYA KVGGISREEM NMLELDFLFG IGFELNVTVS TFNNYCCFLQ REMAMLMKMK SLFLEPSSFK ISSKTKLVMY
201: PHEEDSLSTH HNKKQLAAA
101: SFNVHRLIIT SVLVSAKFMD DLSYNNEYYA KVGGISREEM NMLELDFLFG IGFELNVTVS TFNNYCCFLQ REMAMLMKMK SLFLEPSSFK ISSKTKLVMY
201: PHEEDSLSTH HNKKQLAAA
Arabidopsis Description
CYCU4-3Cyclin-U4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKF6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.